Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0270 ATGGCTGGAATTTGTTGTGGTGTTGTTGAAGGAGAAACCTCAGCTCCAATTACACCATCTTCACTCCGACGACGATGTTTGGACCTGTTCCCTTTGAAATGCATCGCCGACATGGCAGTTCCGCCGATGGAAGGTAGTAACCGGAAACGCCAGAAGCTAGATTCACAGCCACAGCAACGTGAGTTTGATAACGCGGTCCAAAATTGTGAATCTATTCTTACTACACCTAAGGACGAAGAACAAAAGAAGGAGAGTAAGGGACACAACCAAATTGTTATTGTTTCCGAAATTCCTACGTCAGACTCAACGGAGACTAAGTTAGAAAATGAGGTTATGGAAGAAGAGTATCCTAAGTACGGAGTCACATCGGTTTGTGGCAGAAGAAGAGAAATGGAAGATGCTGTTTCAGTGCATCCATCTTTCTTCTCCAAAAACAGTAATAAAGATCAGAAGAGGTTCCATTTTTTCGGAGTCTATGACGGTCACGGATGTTCTCACGTAGCAACGATGTGCAAAGAAAAACTACATGGTATCTTGAAGGAAGAGATTGAAAAAACAGATGAGAATTTAGATTGGAAATCCACCTTGGAAAAGAGCTTCGATCGCATGGACAAGGAAGTCCAGGGGTGCACCCACACCAAGCACACATCCATTTGTAAATGCAACCTCCACACTCCCCACTCTGACGCCGTCGGATCCACCGCCGTCACCGCCATCCTCACGCCAGAAAAGTTAGTTGTCGCTAACTGCGGTGACTCACGCGCCGTTCTCTGCCGTAACGGTGTTGCCATCCCCCTCTCTTCAGATCACAAGCCAGACCGACCCGACGAGTTGGTTCGTGTTGAAGCCGCGGGAGGGCGCGTGATCTATTGGGATGGTGCTAGAGTTCTTGGTGTACTTGCAATGTCTAGAGCAATAGGAGACAATTATTTAAAGCCATACGTAATTTCGGAACCTGAGGTAACGGTAACGGAAAGGTGTGAAGAAGATGAGTGTTTGATACTAGCGAGTGATGGGCTTTGGGATGTGGTGTCAAACGACACCGCATGTGGGGTGGTTCGGACGTGTCTCAAGGCGCAGCATAAGGCGGTGTCGCCGCCGGGGTCTCCGAGAAGTTTGATGACGGCGGAGGGATCTGATAAGGCGTGTTCCGATGCGTCCATTCTGCTGACAAAGTTGGCGTTGGCGAGGCACAGCTCGGATAATGTGAGCGTAGTTGTAGTTGATTTGAGGAAACATAAACGTCAACATCATCATCAAACACCAACAAACAAAAGTGTGATTAGTTTATGCAATAAAAGTGATTAA 1308 0.4732 MAGICCGVVEGETSAPITPSSLRRRCLDLFPLKCIADMAVPPMEGSNRKRQKLDSQPQQREFDNAVQNCESILTTPKDEEQKKESKGHNQIVIVSEIPTSDSTETKLENEVMEEEYPKYGVTSVCGRRREMEDAVSVHPSFFSKNSNKDQKRFHFFGVYDGHGCSHVATMCKEKLHGILKEEIEKTDENLDWKSTLEKSFDRMDKEVQGCTHTKHTSICKCNLHTPHSDAVGSTAVTAILTPEKLVVANCGDSRAVLCRNGVAIPLSSDHKPDRPDELVRVEAAGGRVIYWDGARVLGVLAMSRAIGDNYLKPYVISEPEVTVTERCEEDECLILASDGLWDVVSNDTACGVVRTCLKAQHKAVSPPGSPRSLMTAEGSDKACSDASILLTKLALARHSSDNVSVVVVDLRKHKRQHHHQTPTNKSVISLCNKSD 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0270 435 MobiDBLite consensus disorder prediction 414 435 - -
Lal6g0270 435 SMART PP2C_4 108 408 IPR001932 -
Lal6g0270 435 MobiDBLite consensus disorder prediction 43 66 - -
Lal6g0270 435 ProSitePatterns PPM-type phosphatase domain signature. 155 163 IPR000222 GO:0043169
Lal6g0270 435 Pfam Protein phosphatase 2C 118 402 IPR001932 -
Lal6g0270 435 ProSiteProfiles PPM-type phosphatase domain profile. 118 410 IPR001932 -
Lal6g0270 435 CDD PP2Cc 118 358 IPR001932 -
Lal6g0270 435 Gene3D - 106 420 IPR036457 -
Lal6g0270 435 PANTHER ALPHABET, ISOFORM E-RELATED 28 414 - -
Lal6g0270 435 SUPERFAMILY PP2C-like 111 412 IPR036457 -
Lal6g0270 435 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 28 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0270 Lal-Chr6 1762209 1764336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0270 85 417 PP2C-type Phosphatase Gene Family AT1G07430 57.865 2.31e-142 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0270 K14497 - gmx:100776356 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0270 6 1762209 1764336 Lal6g0270 6 1762209 1764336 ECH
Lal22g0260 22 1645879 1648602 Lal6g0270 6 1762209 1764336 LSH
Lal3g0552 3 4160564 4162318 Lal6g0270 6 1762209 1764336 PCT
Lal6g0270 6 1762209 1764336 Lal3g0552 3 4160564 4162318 PCT