Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0268 ATGAAGGCATTGATCCTGGTCGGAGGGTTTGGGACAAGGTTGAGGCCATTGACACTCAGTTTCCCTAAGCCTCTTGTTGATTTTGCTAACAAGCCAATGATTCTTCATCAGATTGAGGCTCTTAAGGCCATTGGAGTTACTGAAGTCGTACTAGCTATCAATTACCAACCAGAGGTTATGTTGAATTTCTTGAAGGATTTTGAAGAAAAGCTTGGCATCAAGATCACTTGTTCACAAGAAACTGAACCACTGGGAACTGCTGGGCCCTTGGCCCTTGCCAGGGATAAGCTGATAGATGAGTCTGGAGAACCATTTTTTGTTCTCAATAGTGACGTCATCAGTGAGTACCCGCTGAAAGAAATGATTGAGTTTCACAAATCCCATGGAGGAGAGGCTTCTATAATGGTGACAAAGGTTGATGAGCCATCGAAATACGGTGTGGTTGTGATGGAGGAGGCTACAGGGCAGGTTGAGAAATTTGTGGAAAAACCGAAGCTGTTTGTTGGTAACAAAATCAATGCTGGAATCTACCTGTTGAACCCTTCTGTTTTAGATCGAATTGAACTGAGACCCACTTCTATTGAGAAAGAGGTTTTCCCAAAGATTGCAGCAGAGAAAAAGCTATATGCAATGGTTTTGCCTGGATTCTGGATGGACATTGGACAACCAAAGGACTATATTTCTGGCCTGAGACTCTACTTAGAGTCATTGAGGAAAAGGTCATCTCCTAAGTTGGCCAGTGGCACTCACATTGTGGGGAATGTCATTGTGGATGAGACTGCCAAAATTGGTGAAGGATGTCTCATTGGACCTGATGTTGCTATTGGTCCTGGCTGTATTGTTGAAGCAGGAGTTAGGCTCTCGCGCTGCACAGTAATGCGAGGAGGTCGGATAAAAAAACATGCTTGCATATCCAGCAGTATTATTGGGTGGCATTCTACTGTTGGACAATGGGCTCGCGTAGAGAATATGACTATCCTTGGAGAAGATGTCCATGTATGTGATGAAATTTACAGCAATGGTGGTGTTGTTTTGCCTCACAAGGAGATCAAGTCAAATATTCTGAAGCCTGAGATAGTCATGTGA 1086 0.4374 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAIGVTEVVLAINYQPEVMLNFLKDFEEKLGIKITCSQETEPLGTAGPLALARDKLIDESGEPFFVLNSDVISEYPLKEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEEATGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDIGQPKDYISGLRLYLESLRKRSSPKLASGTHIVGNVIVDETAKIGEGCLIGPDVAIGPGCIVEAGVRLSRCTVMRGGRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSNILKPEIVM 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0268 361 Pfam Bacterial transferase hexapeptide (six repeats) 261 295 IPR001451 -
Lal6g0268 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 233 IPR029044 -
Lal6g0268 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 312 IPR029044 -
Lal6g0268 361 Gene3D Hexapeptide repeat proteins 235 358 - -
Lal6g0268 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 361 - -
Lal6g0268 361 Pfam Nucleotidyl transferase 2 230 IPR005835 GO:0009058|GO:0016779
Lal6g0268 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
Lal6g0268 361 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE FAMILY PROTEIN-RELATED 1 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0268 Lal-Chr6 1741787 1745133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0268 1 185 Eukaryotic Initiation Factors Gene Family AT4G18300 23.116 5.57e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0268 K00966 - gmx:100777120 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0268 6 1741787 1745133 Lal6g0268 6 1741787 1745133 ECH
Lal18g1343 18 15867091 15869659 Lal6g0268 6 1741787 1745133 LSH
Lal22g0257 22 1633173 1636516 Lal6g0268 6 1741787 1745133 LSH
Lal3g0557 3 4207679 4210425 Lal6g0268 6 1741787 1745133 PCT
Lal5g1158 5 14309917 14316096 Lal6g0268 6 1741787 1745133 PCT
Lal18g1343 18 15867091 15869659 Lal6g0268 6 1741787 1745133 PCT
Lal6g0268 6 1741787 1745133 Lal3g0557 3 4207679 4210425 PCT
Lal6g0268 6 1741787 1745133 Lal5g1158 5 14309917 14316096 PCT
Lal6g0268 6 1741787 1745133 Lal18g1343 18 15867091 15869659 PCT