Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0264 ATGGCTCCTCTTTCTGATGTCAACCACCTTTCACATCCATATATACATGGTGGGGATTTTTCTTCTTCACACTCGGAGAGAAAGTTTGGCTTAATGAAATGGCTTAGTAACCTTTTCAAAGGTGGGTCCAATAGAGGGAGGGGTAGTCATCATCATCATCTACACGAGCCTGCAGAGGAAAACATGAGTTGGCGCGCTCCATCTATAGCATCGGATGGTCGTGCTAGATCTCAGAAACAAAAAGAGCTCGGCCATGCAATGGAACTTTCTTCAGCCGAAGATTTAAAGAGACCAAATGCCCATCAAGGATATAAATGGGGGACATACAACGATGAAGATTACTACTATAAGGGACTTCCTGATAATTTGGGCTCTTCTGCATACCCTTCACATGATCCTGCACCATATTATCCAAGGGATTATAGAATGAGAGCTGCAACAACTGAACTTGACTATTTGTGTATTTTACAATTGAACAAAAGAATATGTGGGGGCTGCAACAATGAGATACTGCATGGAAATTGTTTGAGCTGCATGGATTCTTATTTTCATCCAGAATGCTTTCGGTGCCACTCTTGTTGTTACCCTATCACTGACCGTGAGTTTTCTTTGTCAGGAAAGCATCCATATCATAAAGTATGTTTTAAAGAGTTGACCCACCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTGTCAATTCTGCTGGCTTGATTGAGTATAGATGCCACCCTTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACATCTCGCTGCTGTAGTTGTGAAAGATTGGAGCCTCGGAATATAAAATACTATAGGCTTGAAGATGGACGTAGTTTGTGCTTAGAGTGCATGGAATCTGCTATAATGGATACTGGTGATTGTCAGCCTCTTTACCATTCTATCAGAGATTATTATGAAGGAATGCATATGAGAATAGATCAACAAATTCCCATGCTTCTGGTTGAGAGAGAAGCACTTAATGAAGCTATTGTTGGGGAGAAAAATGGTTTCCATCACTTGCCAGAAACAAGAGGCTCATGCCTTTCAGAAGAGCAGACTATTCAAAGAAGGCCTAGAATCGGAGGCCGTCGACTAATAGGGATGAGAACTCAACCTCACAAGCTGATCAGAAGAAGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTTCCAAGGTTACTCACAGGTGCTATCCTTGCCCATGAGTTGATGCATGCTTGGTTACGCCTTAAAGGTTACCGCAACCTTAATCCTGAAGTAGAAGAAGGCATTTGTCAAGTTCTTTCATTAATGTGGCTTGAGTCAGAAGTAATGCCAAAGTATCAAAACATGGCATCATCATACACAGCTTCTTCCTCCTCTTCTTCAAAGAAAGGTGCAAAATCTCAAGTTGAAAATAAACTTGGTGAATTTTTCATGAATCAGATTGTCAATGATTCTTCCCCAGCTTATGGTGATGGCTTTAGAGCTGCTAATGAAGCTGTTAAAAAATATGGCTTACGTGCTACTCTCGACCATATTCGTTTGACTGGTTTTTTCCCAATGTAA 1563 0.4056 MAPLSDVNHLSHPYIHGGDFSSSHSERKFGLMKWLSNLFKGGSNRGRGSHHHHLHEPAEENMSWRAPSIASDGRARSQKQKELGHAMELSSAEDLKRPNAHQGYKWGTYNDEDYYYKGLPDNLGSSAYPSHDPAPYYPRDYRMRAATTELDYLCILQLNKRICGGCNNEILHGNCLSCMDSYFHPECFRCHSCCYPITDREFSLSGKHPYHKVCFKELTHPKCEVCFQFIPVNSAGLIEYRCHPFWSQKYCPSHEYDNTSRCCSCERLEPRNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMHMRIDQQIPMLLVEREALNEAIVGEKNGFHHLPETRGSCLSEEQTIQRRPRIGGRRLIGMRTQPHKLIRRSEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSLMWLESEVMPKYQNMASSYTASSSSSSKKGAKSQVENKLGEFFMNQIVNDSSPAYGDGFRAANEAVKKYGLRATLDHIRLTGFFPM 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0264 520 Pfam Protein DA1 312 515 IPR022087 -
Lal6g0264 520 Gene3D Cysteine Rich Protein 157 236 - -
Lal6g0264 520 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 152 188 - -
Lal6g0264 520 CDD LIM_DA1 163 215 - -
Lal6g0264 520 Pfam LIM domain 163 216 IPR001781 -
Lal6g0264 520 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 21 520 - -
Lal6g0264 520 MobiDBLite consensus disorder prediction 45 64 - -
Lal6g0264 520 ProSiteProfiles LIM domain profile. 161 221 IPR001781 -
Lal6g0264 520 PANTHER PROTEIN DA1-RELATED 2 21 520 IPR045218 -
Lal6g0264 520 SMART lim_4 162 214 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0264 Lal-Chr6 1715021 1719920 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal6g0264 DA1-like 2.1e-92 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0264 - - gmx:100784976 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0264 6 1715021 1719920 Lal6g0264 6 1715021 1719920 ECH
Lal22g0253 22 1579117 1583369 Lal6g0264 6 1715021 1719920 LSH