Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0236 ATGGTGACGACTAAATCACCCTCCTCCGCCTTCATCCTCATCGTCGCCGCCGTCTTGACCTTCTCTTTGTTATTATCATTGTGTCATGCTCTAGGCTCCGGCACAACCCTCGCTGTCAGTGACGCCTCCGCTACCGTCTGTGGCATCGTGGCATCACAACCAACCCAACGCATTGAGTGCTACCGTAACGGCCACGTTATCGCCGTTGTACCCAACGTCTCATTTTCCGCCATCTCCGGCGGAAGAAACTACTTTTGCGGCCTCAGGTCCGGTAACTATAGCTTACTCTGCTGGAACACTGTTTCCTCCGACGTTACCTTCGAAAGGAGAAGACTTTACAACAATGACACTGTTCTATTTGAGAATCTCGCTGTTGGTAGCACTCAAGTTTGCGCTACAATTGTTGCTGCTGGAACGGTGTCGTGTTGGAGAATCAATAGCGCGTTTGAATTGCCATTTGGGTATAATCAATTTGCTTCTATTTCATCTGGGTCTGATTTTTCTTGTGGAATTGTGAAGAACAGTTCCCGAGTTCGGTGTTGGGGTAATGTGTCTATTGCTAGAAAGATAGAGAGTGAGTTTGGGAACATTTCTATGTTGAGTATTGTGGCGGGTGACTCACATGTTTGTGGGTTGAATTCAAATGGGTTTTTGGTATGTAGAGGAAGCAATAATTTTGGTCAAATTGATGTTCCAAAAGGAATGTCTTTTGAGTATTCTGGGTTGGCTCTTGGAGCTGAACATAGCTGTGCTATTAGGAGATGGAATGGTTCTGTTGTTTGTTGGGGTGGTAGGGGATTGTTCTCTGTTAATGTTACTCAGGGTGTTTCTTTTGAGACCATTGTTTCTGGCTCCAATTTTACTTGTGGATTGACAACAAACAATTTTTCTGTTATGTGTTGGGGCCCTGGTTGGTCTAATAGTGATGGTTATAGTTCTACGTTTGAGCTTCCCCTGTCTCCTATTCTTCCCGGGCCTTGTGTTCAATCTTCTTGTAGTGATTGTGGTGTATATGCTGGGTCTCATAATTTGTGTTCTGGACGCGGTATCATTTGCAAGCCTTGGCCATGTTCGCCTCAAAATCCAGCCTCGGTGGTACCACTTCCTTTACCACCATCCCAGGCTTCTTCTCCTTTGCGGTCAAAGGCATGGACAACTGGCTTGCTGGTATTTGCCATTGTTGGACTAGTGGGAGTTGTTTCTGGCACTTGCACCATAATTTATTGCTTGTGGACTGGTGTTTGTTTGGGGAAGAAGAAAGTTTATAATTCTGTGCAGCCAACTATTACTAGAGGTTGCAGTTCAAATGGTGGTGTTAATAGGCTGGCTTCGAGATCATCCACCATTATGCGCCAGGGCTCAAGAATAATGCGGCGCCAGAGGAGTGGAACATCATCAACAAAACATCCAGACAGGGCGGAGGAGTTCACCCTGGCTGAGCTTGCTGCGGCCACCAACAATTTTTCTCTTGAGAACAAGATTGGTGCTGGAAGCTATGGTGTTGTGTATAAAGGCAAACTCCCTGATGGTCGCGAAGTAGCAATCAAGAGGGGTGACACTGGTACCAAGATGAAGAAGTTTCAAGAGAAAGAGTGTGCATTTGAGGCGGAATTGGGGTTCTTGTCCCGTCTACACCACAAGCATTTGGTTAGGCTAGTTGGGTACTGTCAAGAGAAAGATGAAAGGCTCTTGGTGTATGAATACATGAAGAATGGGGCACTATATGACCATTTGCATGACAAAAACAATGTGGACAGGAATAGTAGTGCCTTGAATTCTTGGAGAATGAGGATCAGAATGGCATTGGATGCTTCGCGAGGAATCGAATATCTCCATAATTATGCAGTTCCATCTATAATTCACCGAGATATCAAGTCCTCTAACATTCTGATTGATGCAAATTGGACGGCAAGAGTATCTGATTTTGGGCTGTCACTGATGTGTCCGGATTCTGGCCATGATTACCGGCCTACAAAGGCAGCCGGAACGGTTGGATACATTGATCCTGAGTATTATGGTCTAAATGTTTTGACAGCAAAGAGTGATGTCTATGGGCTTGGAGTGGTACTGCTAGAACTCTTGACAGGAAAGAGAGCCATATTCAAGCATGGTGAGAATGGAGGCACTCCTGTGAGTGTTGTAGATTATGTTGTGCCTGCAATCATGGGAGGAGAATTGTTGCAGATTTTGGACCCGAGGGTTGAACCACCGGAGTTGAATGAAACAGAAGCAGTGGAGCTGGTGGCCTATACCGCAATGCATTGTGTAAATTTGGAAGGGAAGGATAGACCAACAATGACTGACATTGTGGCCAATTTGGAGCGTGCTTTGACTCTCTGTGATTCTAGTCATGGCAGCATTTCTAGCGGTACAATCTCTAATGTATCAGCCTGA 2394 0.4557 MVTTKSPSSAFILIVAAVLTFSLLLSLCHALGSGTTLAVSDASATVCGIVASQPTQRIECYRNGHVIAVVPNVSFSAISGGRNYFCGLRSGNYSLLCWNTVSSDVTFERRRLYNNDTVLFENLAVGSTQVCATIVAAGTVSCWRINSAFELPFGYNQFASISSGSDFSCGIVKNSSRVRCWGNVSIARKIESEFGNISMLSIVAGDSHVCGLNSNGFLVCRGSNNFGQIDVPKGMSFEYSGLALGAEHSCAIRRWNGSVVCWGGRGLFSVNVTQGVSFETIVSGSNFTCGLTTNNFSVMCWGPGWSNSDGYSSTFELPLSPILPGPCVQSSCSDCGVYAGSHNLCSGRGIICKPWPCSPQNPASVVPLPLPPSQASSPLRSKAWTTGLLVFAIVGLVGVVSGTCTIIYCLWTGVCLGKKKVYNSVQPTITRGCSSNGGVNRLASRSSTIMRQGSRIMRRQRSGTSSTKHPDRAEEFTLAELAAATNNFSLENKIGAGSYGVVYKGKLPDGREVAIKRGDTGTKMKKFQEKECAFEAELGFLSRLHHKHLVRLVGYCQEKDERLLVYEYMKNGALYDHLHDKNNVDRNSSALNSWRMRIRMALDASRGIEYLHNYAVPSIIHRDIKSSNILIDANWTARVSDFGLSLMCPDSGHDYRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKHGENGGTPVSVVDYVVPAIMGGELLQILDPRVEPPELNETEAVELVAYTAMHCVNLEGKDRPTMTDIVANLERALTLCDSSHGSISSGTISNVSA 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0236 797 Pfam Protein kinase domain 489 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0236 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Lal6g0236 797 Gene3D Phosphorylase Kinase; domain 1 448 568 - -
Lal6g0236 797 Gene3D - 28 195 IPR009091 -
Lal6g0236 797 Gene3D - 196 349 IPR009091 -
Lal6g0236 797 Gene3D Transferase(Phosphotransferase) domain 1 569 786 - -
Lal6g0236 797 SUPERFAMILY Protein kinase-like (PK-like) 465 773 IPR011009 -
Lal6g0236 797 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 8 792 - -
Lal6g0236 797 ProSiteProfiles Protein kinase domain profile. 488 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0236 797 SMART serkin_6 488 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0236 797 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 8 792 IPR044815 GO:0004674
Lal6g0236 797 ProSitePatterns Protein kinases ATP-binding region signature. 494 516 IPR017441 GO:0005524
Lal6g0236 797 SUPERFAMILY RCC1/BLIP-II 30 264 IPR009091 -
Lal6g0236 797 Pfam Regulator of chromosome condensation (RCC1) repeat 201 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0236 Lal-Chr6 1562697 1565090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0236 12 796 Receptor kinase-like Gene Family AT3G55950 59.606 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lal6g0236 Pkinase 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0236 - - gmx:100782916 1205.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0236 6 1562697 1565090 Lal18g1373 18 16062784 16065183 ECH
Lal6g0236 6 1562697 1565090 Lal6g0236 6 1562697 1565090 ECH
Lal18g1373 18 16062784 16065183 Lal6g0236 6 1562697 1565090 LSH
Lal22g0222 22 1370747 1373164 Lal6g0236 6 1562697 1565090 LSH