Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0233 ATGATGACGATGATGAATTCCACCGCCAAATCCAACAGCGGAGATCGCATCAAAGGTTCATGGAGTCCACAAGAGGATGAAACGCTGTTGAAACTGGTTGCGCAACACGGCCCAGGGAACTGGTCGGCGATCAGTTCCGGTATTCCAGGGCGTTCCGGCAAATCGTGCCGTCTCCGGTGGTGTAATCAGCTAAGCCCCGACGTGCAGCATCGTCCATTTACCCCTGCAGAGGATAGTATCATTATCAATGCCCACGCGGTTCATGGTAACAAGTGGGCTACGATTTCAAAACTCTTACCAGGACGCACTGACAATGCAATTAAGAATCATTGGAATTCCACTCTCCGCCGCCGTCGTTTGGCACAAGGATCCTCTTCCTCGGATTCCGATACGGCGGTGTTTAAGAAGCGCACCACCAATGACTTCCTCCTCCATTCCAACACAGGTTTATTGGATCAGAGTTATCCACTCAAGAAGCCTTACAGGGAAAGATATTCATATGAGAATAAAAGTTTGGGTTCAGGTTCAGCGGAGATAACACGGAGAACAATATCACCGGATAATGATAATAATTGTCATGTGATGACGTCATTGAGCCTGTTACCACCGGGTACGGAGGAAGAAGATGAAGATGAAGATGAAGGGAATGATGAAATGGTGAATGAGCAAAGGAGCATGATGGAGATGATGCGGCGTATGATAGCTCATGAGGTTAGGAATTACATGGATTCCTTGGCCCTTCATCCACCACCTCCTAAGTAA 762 0.479 MMTMMNSTAKSNSGDRIKGSWSPQEDETLLKLVAQHGPGNWSAISSGIPGRSGKSCRLRWCNQLSPDVQHRPFTPAEDSIIINAHAVHGNKWATISKLLPGRTDNAIKNHWNSTLRRRRLAQGSSSSDSDTAVFKKRTTNDFLLHSNTGLLDQSYPLKKPYRERYSYENKSLGSGSAEITRRTISPDNDNNCHVMTSLSLLPPGTEEEDEDEDEGNDEMVNEQRSMMEMMRRMIAHEVRNYMDSLALHPPPPK 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0233 253 MobiDBLite consensus disorder prediction 183 198 - -
Lal6g0233 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Lal6g0233 253 Pfam Myb-like DNA-binding domain 72 114 IPR001005 -
Lal6g0233 253 Pfam Myb-like DNA-binding domain 18 64 IPR001005 -
Lal6g0233 253 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lal6g0233 253 PANTHER MYB PROTEIN-RELATED 9 228 - -
Lal6g0233 253 CDD SANT 72 115 IPR001005 -
Lal6g0233 253 Gene3D - 17 69 - -
Lal6g0233 253 Gene3D - 72 118 - -
Lal6g0233 253 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 9 228 - -
Lal6g0233 253 MobiDBLite consensus disorder prediction 1 19 - -
Lal6g0233 253 SUPERFAMILY Homeodomain-like 16 111 IPR009057 -
Lal6g0233 253 MobiDBLite consensus disorder prediction 204 218 - -
Lal6g0233 253 MobiDBLite consensus disorder prediction 1 21 - -
Lal6g0233 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 68 IPR017930 -
Lal6g0233 253 MobiDBLite consensus disorder prediction 183 223 - -
Lal6g0233 253 ProSiteProfiles Myb-like domain profile. 13 64 IPR001005 -
Lal6g0233 253 SMART sant 69 117 IPR001005 -
Lal6g0233 253 SMART sant 17 66 IPR001005 -
Lal6g0233 253 CDD SANT 20 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0233 Lal-Chr6 1530458 1531219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0233 14 118 MYB Transcription Factor Family AT3G50060 69.524 2.04e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal6g0233 Myb_DNA-binding 6.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0233 - - gmx:102661292 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0233 6 1530458 1531219 Lal6g0233 6 1530458 1531219 ECH
Lal22g0217 22 1335022 1336095 Lal6g0233 6 1530458 1531219 LSH