Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0232 ATGGAACCTCATCACCTACCCCAAGAAACCAAACCCACCGCCACCACCGTTGCTATCACCACTCCTTGTGAAACAACTAACAGTGCCAACAGTAACAGTTCTAGCAGCAAGACCACCACCGCTAATAATAGTAGTCACCGAAAATGCAAAGGTAAAGGTGGCCCTGATAACAACAAATTTCGATACCGTGGTGTGAGACAACGAAGTTGGGGTAAGTGGGTAGCTGAGATACGTGAGCCACGTAAGCGTTCACGTAAGTGGCTTGGCACCTTCTCCACTGCCGAAGACGCCGCCAGAGCCTACGACCGCGCCGCCGTTGTTCTCTATGGTTCTAGGGCACAGCTCAACCTCCAACCTTCTTCCACGTCTTCTCAATCTTCCTCCTCTCGTGGCTCTTCTTCTTCCACTCAAACTCTAAGACCTTTACTTCCTCGCCCTTCCGGATTTGGTTTCAACTCTTCCGCTTCTCACGTTCCTATGGTGTTCAACGGTGCTGTTACGTCGGGTTTTCTGCCTTATGGGGTTTACCCTTGCGGCGGCGGTAATAATAACAGTAATATTGTGCCACAGGTGTTGTGCCCTATTGATAATAATGTGGTGCAACATCGTCAACATCACTATCATCAACCTCAGCAATCAGAGCAACAATTACAACACCAACAAAAATGTAACTACCCCGAATCTGATGTGGGTGTAGCAGGTTCCATCAATTCTACCTCATACCAAAATCATAGTCTCAATCATCAACTTGTTCAGCATATTCCTGTGTCAAATCATCTGCAGCATCAAAATTTCATGGTTGAGGAAATGAATTCTTTTGTGGGTTCGAATTTGTCTTCTCAGATTACTTTAGATCAGGCAGCGCTGGGTCAGGATCCAGATCCATCGTTGGGGGTTGTTGGGGCAGTAGGTCTCGGTTCTCCTTCGATGTGGTCATTTACAAATGAGGATGGGTACCCATATTCAGCTAGCTTATGGGATTATAATGATCCTTCGTTTTTTGATTTTTGA 1011 0.4639 MEPHHLPQETKPTATTVAITTPCETTNSANSNSSSSKTTTANNSSHRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRSRKWLGTFSTAEDAARAYDRAAVVLYGSRAQLNLQPSSTSSQSSSSRGSSSSTQTLRPLLPRPSGFGFNSSASHVPMVFNGAVTSGFLPYGVYPCGGGNNNSNIVPQVLCPIDNNVVQHRQHHYHQPQQSEQQLQHQQKCNYPESDVGVAGSINSTSYQNHSLNHQLVQHIPVSNHLQHQNFMVEEMNSFVGSNLSSQITLDQAALGQDPDPSLGVVGAVGLGSPSMWSFTNEDGYPYSASLWDYNDPSFFDF 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0232 336 Pfam AP2 domain 61 108 IPR001471 GO:0003700|GO:0006355
Lal6g0232 336 CDD AP2 61 116 IPR001471 GO:0003700|GO:0006355
Lal6g0232 336 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
Lal6g0232 336 MobiDBLite consensus disorder prediction 49 63 - -
Lal6g0232 336 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4 4 334 - -
Lal6g0232 336 MobiDBLite consensus disorder prediction 22 47 - -
Lal6g0232 336 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Lal6g0232 336 Gene3D AP2/ERF domain 60 118 IPR036955 GO:0003700|GO:0006355
Lal6g0232 336 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Lal6g0232 336 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Lal6g0232 336 MobiDBLite consensus disorder prediction 117 142 - -
Lal6g0232 336 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 334 - -
Lal6g0232 336 MobiDBLite consensus disorder prediction 117 145 - -
Lal6g0232 336 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677
Lal6g0232 336 MobiDBLite consensus disorder prediction 22 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0232 Lal-Chr6 1523796 1525430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0232 45 336 AP2-EREBP Transcription Factor Family AT2G40220 43.590 1.16e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal6g0232 AP2 7.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0232 K09286 - gmx:100301892 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0232 6 1523796 1525430 Lal6g0232 6 1523796 1525430 ECH