Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0230 ATGGACAATGTTGTTCTATCTGCAATGATGATCTCACCAGATTTGTTACCAACTGGTTCCCTGTTAAGTTCTCTGATTCACATATCCAATGAAGTTGGATCAATGGATAAGTTTCCTTTTGTACACAGAAGGAATGTTTCATCCATGATAAGGAGGATCAAGCTTCTTTCTTCTTTGTTTGAAGAGATTCAAGAAACAGGTACTTCACTTCCTCCTTCTTCAATCCTGTGTTTCACTGAGCTCTTCTCTGTGATTAGAAGAGCGAAGGTTTTGATCGAAGAGTGCAAAGATGGAAGCTTTCTCTGGGGTCTAATACAGTTAGAATTCATTTGCAACAAATTTAATGTGCTTGTGAAGGAGATGGGAAGAGCCCTTGATATTCTGCCACTCAAGTTTCTTAATATATCAGCAGATATAAGGGAACAATTGGAGCTTTTGCAAAAACAGACAAATAGAGCTGAGTTACTCATTGATCCTAGAGAGCTTCAAAGCAGAGAACAGCTAGTACAAGTAATGTCCAACAACACTTCACAAACAAAGAAGAACAAGGGGTTTATTGACTTCGGGAAAGTGCAAGAGATATTAAGCAGCATTGGTTTCAGGATTCCATCAGATTATGATAGAGAAATATCCAAGTTAGAGGTTGAAGCTCAGAATGAAGCTGGCACAGGAGGACTAACAGTTGTCTCCAATATATACAATCTCATAGCATTGGTTTCTTATTCCAAATCCATTATATTCAGAGATGGAGAAATTGAAAGAGATGAAGTGAATAAGCCATCATTGTCTGCATTTTTATATACCAATAAAATGTTACACGATAGTTCATCTTCTCATTCTATGACTATAGTGCCTAATATTCCTCATGAATTTCGTTGCCCGATTTCACTTGATTTAATGAGGGATCCGGTGATTGTATCATCAGGTCACACTTATGATAGAATTTCAATTGCACAATGGATAAACTCAGGACACAACACTTGCCCAAAAAGTGGTCAAAGGCTAATTCACACAGCTTTAATACCAAACTATGCATTGAAGAGTCTAGTTCAGCAGTGGTGCTATGAGAACAATGTCCCAGTGAATGAGCCAGAAAATTCACTTTCTGAGGGAAACAAAAGCAGCAAGAAGAACTCAAAAGAAGACGCTGTTGATCATATTTCTGCAAACAAAGCAGCATCAGGTGCTGTCAAAATGACAGCAGAGTTTCTAGTTGGAAAACTGGCCACTGGTTCAGCTGATATACAAAGGCAAGCAGCATATGAACTTCGGTTGCTTGCCAAAACCGGCACGGATAACCGAAGAATCATAGCTGAGGTAGGGGCTTTTCCATTTCTAGTAACACTATTAGGATCTCAGGATCCAAGAACTCAGGAATATGCAATCACAGCCTTGTTCAACCTCTCAATATTTGACAACAACAAGGTTTTGATCATGGCAGCTGGTGCGGTTGATAAAATAGTACAAGTGCTAGAATCAGGGAAGACCATGGAGGCAAGAGAAAATGCTGCAGCAACAATATTTAGTTTGTCTATGGTAGATGATTTCAAAGTGCAAATTGGAGCGTGTCCGAGGGCAATACCTGCCTTAGTAGGACTACTTAGAGAAGGTAATACTATAGGGAAAAGAGATGCTGCTACTGCATTATTCAACCTTGCAATTTATAATCTTAACAAAGTAAGCATTGTTAATGCTGGTGCAATACCTATACTTGTGGAGTTGTTGATGGATGATAAGGCTGGAATAACAGATGATTCTTTAGCAGTGCTTGCTTTACTCTTAAGTTACTCTCAGGGGCTAGATGAGATAAAGAATAGTAAATCATTGGTGCCACTTCTTATTGATCTTTTGAGATTTGGGTCAGTTAAAGGGAAGGAAAATTCAATAACTCTTTTATTGGGATTGTGCAAAGAAGACGGGGAACTAGTGGCGAGGCATCTCTTGGCAAATCCAAGGAGTATTCCTTCCCTTCAAAGCTTGGTTGCAGATGGTTCTTTGAGAGCTAGGAGAAAAGCTGATGCACTGCTTCGGTTACTCAATAGATGCTGCTCTCAACCTCATTCCATTTGA 2070 0.3928 MDNVVLSAMMISPDLLPTGSLLSSLIHISNEVGSMDKFPFVHRRNVSSMIRRIKLLSSLFEEIQETGTSLPPSSILCFTELFSVIRRAKVLIEECKDGSFLWGLIQLEFICNKFNVLVKEMGRALDILPLKFLNISADIREQLELLQKQTNRAELLIDPRELQSREQLVQVMSNNTSQTKKNKGFIDFGKVQEILSSIGFRIPSDYDREISKLEVEAQNEAGTGGLTVVSNIYNLIALVSYSKSIIFRDGEIERDEVNKPSLSAFLYTNKMLHDSSSSHSMTIVPNIPHEFRCPISLDLMRDPVIVSSGHTYDRISIAQWINSGHNTCPKSGQRLIHTALIPNYALKSLVQQWCYENNVPVNEPENSLSEGNKSSKKNSKEDAVDHISANKAASGAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGTDNRRIIAEVGAFPFLVTLLGSQDPRTQEYAITALFNLSIFDNNKVLIMAAGAVDKIVQVLESGKTMEARENAAATIFSLSMVDDFKVQIGACPRAIPALVGLLREGNTIGKRDAATALFNLAIYNLNKVSIVNAGAIPILVELLMDDKAGITDDSLAVLALLLSYSQGLDEIKNSKSLVPLLIDLLRFGSVKGKENSITLLLGLCKEDGELVARHLLANPRSIPSLQSLVADGSLRARRKADALLRLLNRCCSQPHSI 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0230 689 Pfam MCAfunc domain 41 162 IPR045766 -
Lal6g0230 689 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Lal6g0230 689 Gene3D - 542 682 IPR011989 -
Lal6g0230 689 CDD RING-Ubox_PUB 291 333 IPR045210 -
Lal6g0230 689 Pfam Armadillo/beta-catenin-like repeat 431 469 IPR000225 GO:0005515
Lal6g0230 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 441 483 IPR000225 GO:0005515
Lal6g0230 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 362 IPR013083 -
Lal6g0230 689 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Lal6g0230 689 MobiDBLite consensus disorder prediction 361 383 - -
Lal6g0230 689 PANTHER U BOX DOMAIN-CONTAINING 18 687 - -
Lal6g0230 689 SMART arm_5 514 554 IPR000225 GO:0005515
Lal6g0230 689 SMART arm_5 471 512 IPR000225 GO:0005515
Lal6g0230 689 SMART arm_5 555 595 IPR000225 GO:0005515
Lal6g0230 689 SMART arm_5 596 637 IPR000225 GO:0005515
Lal6g0230 689 SMART arm_5 430 470 IPR000225 GO:0005515
Lal6g0230 689 SUPERFAMILY RING/U-box 276 361 - -
Lal6g0230 689 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Lal6g0230 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 525 567 IPR000225 GO:0005515
Lal6g0230 689 Gene3D - 366 539 IPR011989 -
Lal6g0230 689 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 18 687 - -
Lal6g0230 689 SUPERFAMILY ARM repeat 402 679 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0230 Lal-Chr6 1508605 1510674 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0230 19 685 U-box Gene Family AT3G46510 37.500 2.35e-128 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0230 - - gmx:100793498 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0230 6 1508605 1510674 Lal6g0230 6 1508605 1510674 ECH