Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0225 ATGGCTAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGTGGTGCTTTTGCTCCCAAACCTTCATCTGGACCACACAAGTCCAGAGAATGTCTCCCACTCATTCTCATCTTGCGAAACCGGTTGAAATATGCCTTGACATACCGTGAAGTCATTGCTATTCTTATGCAGCGCCATATCCTTGTTGATGGCAAAGTCAGGACCGACAAGACATATCCCTCTGGTTTTATGGATGTTGTATCTATCCCTAAAACAAATGAGAACTTCCGTCTGCTTTACGACACCAAAGGTCGTTTCCGTCTCCACTCCGTTAGGGACGACGAGGCTAAGTTTAAGCTCTCCAAGGTTCGATCAGTGCGGTTTGGGGATAAAGGTATCCCATACTTGAACACATATGATGGTCGCACTATCCGCTACCCTGACCCTGTCATCAAGGCAAATGACACCATCAAGTTGGATTTGGAGGAGAACAAGATCGTTGACTTCATCAAGTTTGATGTCGGCAATGTTGTGATGGTCACTGGTGGAAGGAATAGGGGACGTGTTGGAGTGATCAAGAATAGGGAGAAGCATAAGGGAAGCTTTGAGACAGTTCACATCCAGGATTCCACTGGACATGAGTTTGCAACTCGTATGGGCAATGTGTTCACCATCGGCAAAGGCACCAAGCCATGGATCTCTCTTCCCAAGGGCAAGGGTATTAAGCTATCAATCATTGAGGAAGCTAGGAAGAGGATTGCTGTTCAACAGCTAGTCACTGCTTAA 795 0.4629 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHILVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLSKVRSVRFGDKGIPYLNTYDGRTIRYPDPVIKANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETVHIQDSTGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLSIIEEARKRIAVQQLVTA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0225 264 Hamap 30S ribosomal protein S4e [rps4e]. 7 238 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lal6g0225 264 ProSitePatterns Ribosomal protein S4e signature. 8 22 IPR018199 -
Lal6g0225 264 PANTHER 40S RIBOSOMAL PROTEIN S4 2 220 - -
Lal6g0225 264 PANTHER 40S RIBOSOMAL PROTEIN S4 221 260 - -
Lal6g0225 264 CDD KOW_RPS4 175 229 IPR041982 -
Lal6g0225 264 Pfam KOW motif 177 210 IPR005824 -
Lal6g0225 264 Gene3D - 122 172 IPR038237 -
Lal6g0225 264 Gene3D - 1 117 IPR036986 GO:0003723
Lal6g0225 264 SMART kow_9 174 201 IPR005824 -
Lal6g0225 264 PIRSF RPS4a_RPS4e 1 241 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lal6g0225 264 SMART s4_6 42 106 IPR002942 GO:0003723
Lal6g0225 264 Pfam 40S ribosomal protein S4 C-terminus 212 257 IPR032277 -
Lal6g0225 264 Gene3D - 175 245 IPR014722 -
Lal6g0225 264 CDD S4 51 112 - -
Lal6g0225 264 Pfam S4 domain 47 90 IPR002942 GO:0003723
Lal6g0225 264 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 220 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lal6g0225 264 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 221 260 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lal6g0225 264 Pfam Ribosomal family S4e 95 169 IPR013845 -
Lal6g0225 264 Pfam RS4NT (NUC023) domain 3 39 IPR013843 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0225 Lal-Chr6 1496375 1498587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0225 1 260 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 91.154 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0225 K02987 - gmx:547645 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0225 6 1496375 1498587 Lal18g1391 18 16184292 16187242 ECH
Lal14g0711 14 8450875 8453231 Lal6g0225 6 1496375 1498587 ECH
Lal6g0225 6 1496375 1498587 Lal6g0225 6 1496375 1498587 ECH
Lal18g1391 18 16184292 16187242 Lal6g0225 6 1496375 1498587 LSH
Lal22g0214 22 1318899 1321025 Lal6g0225 6 1496375 1498587 LSH