Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0220 ATGGGCAGAAAAAGGATTGTGCATCAATCAAATCATCCATTCGCTTCTTACCCCTTTGAAGCATATATCTCTGGTTCATGGCAATCCGTGGAGTTCATAACAATTGAGTCTGGAACTTTATTCATGCATTTAAAAAATAAGTACCCTGTGGCTATGGAGAAAGGCCCCTTTTCAGATATAAGGGTAAAGTCGAGGAAAGCTGTTTTATCAGATTGCTCGAGTTTTTTACGGCCTGGAATGGACATATCTGTGCTGTCACCCCCCAAGCAGACTAATAATTCTGATGAAATAAATCTCAAGCCTGTACGGCTTGATGCTAGAATAAGTTCTATACAGAGGAAGCCCCATAGTTCAGAGTGCCAATGTCAGTTTTATGTAAACTTCTATGTCAATCAAGGTTCACTTGGTACAGAGCTAAGAACTCTTAGAAAAGAGGTCAAGGTATTCACAATAAATGAAATCTCCATCCTCCAAAAGCTCGAACATAATCCTTGTGAAAATGAGTATTACCGGTGGACTTCATCTGAGGACTGCCCTGCATTACCAAATACAAAATTACTTCTAGGGAAATTCTTAGCTGACATTTCATGGTTAGTGGTTGCGTCTTTTGTGAAGAAGGTTATGTTCTGCGTGCGAACTGTTAAAGACAAGCTTGTATATCAAATTTTGGAAAGTGAAATTGCTGAATCTTCATTGTACACCGAGTCTACGATAAATGTTGTGAGTTTCACATTAAATGAGGAGGATGGTTTGTTAGTATCCAATGTTTCTCAAGTTGTTACTGCTAAGCCAGAGGCTATTGAATATGTACATGAATCTCATGAAGAGAAAGTCTCTCCATCATCATATAATGTTGAGGGCTTACGGCGTTCCAAACGCCGACATGTTCAGCCCGAGCGCTACCTTGGCTACAGTGATGTTACTGAGTTTGATGTTGGTTCTTTCAGAACCCAGCCACCACTCAAGATAGAAACAGCAGCTAAAGGTGATGATGAATTTACACTACCATTATCATGCATGTTAACTTTGAAACAAAAGCCTCTACAAGAGGATGTGGACAATTCACAAAATTTCAGCAGAATGAATACCAGCGGGGAACTTCTAGAGTACAGTAGGAGGAAAAGGCCTAAAACTAAGAAGCCAAAGTCAATTCGCAGCCATCAAAATGAACATAAAAATCAACTTGCTATTATTCCTCTTCCTGATGTAGGAGAGCCAATAAGTGTTGAGCATTGTGATCTGAATGACAATGTTTCTGTAAGTCATGGACATGAATCTTTTGATACTCCTTTAAACATTTATCATCATCATCTGGCAAGTAGCTCTAAACAAAAGTGCAAAAATGTTAATTTGTTAACATTTGAGCCAAATAGTCTGCCTGCAAAAGCAAATCATGCAGAAAAGAGTGATGAACTTACTTCAAGAAGTCATTTTGGTTATAGCATATCTAACTTACAGAGGAAGGATTCATTTGTTATGGATGATATGGACCTCGGAGGAACTAAATGGGAAGGAATAAGTTTCAGCAAAGGAGTTCAAGAGAAAACATACCATCCTACATATTCAAGAAGTAGAAATCCTGAAGAAGAAAAAACATATAAGGATAGAACCTTGAATGCAACTGCCTACAAGGATTTGATAAATTCATACTTGATGAACATCGATGTAAAACCAACAGAAGAACCACCTGTCACTGACCAGTGGAAGCAATTCCAGGAAACAAGCGGCTTTAGTGGAATAAAGGAAACAGAAACAGAAATATTCGATGAAGAGGATGAGGATGATGAAGAATCTGAAATTGATATGTTGTGGCAAGAAATGGAAGTGTCATTGGCATCATGTTATCTTCAAGACACAGAGGGTGTGAATGCTGTCAATCAAGCTGAGACTGTGGAAAAATTGAAACAAGGTTGTCCACATGATGAAAGAATGGATGACCAAATTGGAATTCACTGCCGCATATGTGGTCATGTGTTTGTCGACATCACGAATATTTTTCCACCCTTTCTTGAACGGCCCGATCGCCACCGAGAGGATAAGCAGTGCAGTGGAGAAGATTCTGATTTAGAGCGAAAGGCTGATGAAGATGATGATTATCATCTTTTCTCGGCCAATGCTCCTCCTGGTGATGAACCTAAAACTGAAGAAAGTGAAAATGTCTGGGCATTAATTCCTGAACTTAGACCAAAGTTACATGCCCACCAAAAGAAAGCTTTTGAGTTCCTATGGCAGAATATTGCAGGGTCTATGGAGCCATCACTTATGAAAACAGATTCCAAAAAAATAGGTGGTTGTGTGATATCTCACACTCCTGGAGCTGGAAAAACTTTTCTCATAATTGCTTTTCTTGTCAGTTACTTAAAATTGTTTCCAGGGAAGAGGCCTCTGGTTCTGGCTCCTAAGACAACACTTTACACCTGGTATAAGGAATTCATAAAGTGGAAAATTCCAATACCAGTGTACTTGATTCATGGTCGAAGAACCTACAGGGTGTTCAATCAGAAAAACTCGATGGTTTTTCCTGGAATTCCGAAGCCTACTGAGGATGTCAAGCATGTTTTGGATTGCCTAGAGAAGATAAAAAATTGGCATTCACAACCCAGTGTTCTAATAATGGGTTATACATCCTTTTTGACATTGATGCGAGAGGATTCGAAGTATGCACATAGGAAGTATATGGCAAAAGTATTGAGAGAAAGTCCTGGGATGCTGATACTGGATGAAGGACACAATCCTAGGAGCACTAAATCTCGGTTGAGAAAAGTTTTGATGAAAGTACACACAGACTTGAGGATATTACTTTCAGGTACATTGTTTCAAAACAACTTTTGTGAATACTTCAACACTCTCTACTTGGCTAGACCAAAGTTTGCTAAGGAAGTGCTGAAACAATTAGATCCAAAATACAAGAGGAAGAAAAAGAAAGGAACTAATTATGAGTCGCGTGCTAGAAAACTATTCTTAGATACAATTGCTAGGAAAATCGACTCAAATGATAATGAGGAGAGGATTGAAGGTCTAAACATGTTGAGAAATGTAACACATGGTTTTATAGATGTGTATGAAGGTGGGAGTTCTGATGGTCTCCCTGGTTTACAAATTTATACACTGCTGATGAATCCAACAGAAACACAGCACGAGATGCTGCATACCCTGCACCAGAAAATGGGTCAGAGCAATGGATACCCTCTGGAGATAGAGCTGTTAATAACTCTTGGATCTATACATCCTTGGTTGATCAAAACAGCTGTGTGTTCTGAGAAGTTTTTCAGTAACGAGCAATTGATGGACCTAGAGAAGTGTAAGTTTGATTTGAAAATAGGGTCAAAAGTGAAGTTTGTTTTGAGCCTTATCTATCGGGTTGTCAAGAATGAGAAGGTCCTTATCTTTTGCCACAACATAGCACCTGTGAAATTATTTCTTGAGTATTTTGAGAGGTACTTCAGATGGCAAAGAGGTAGGGAAGTTTTGGTACTGACTGGGGAACTCGAGCTCTTTGAACGCGGTAGAGTGATGGATAAGTTTGAGGAGCCTGGTGGAGTGTCAAAGATACTTCTTGCTTCAATTACAGCATGTGCCGAAGGCATTAGTTTGACCGCAGCTTCTCGGGTTATCATGTTGGATTCAGAGTGGAATCCATCAAAGACAAAGCAGGCTATTGCCCGAGCTTTTCGGCCTGGTCAGCAAAAGATGGTTTATGTATATCAGCTCTTGGTATCAGGTTCACTGGAGGAGGATAAGTACAAAAGAACCACTTGGAAAGAGTGGGTATCTAACATGATTTTTAGTGAAGATTTTGTGGAGGACCCCTCCCAGTGGCAAGCTAATAAGCTTGAAGATGATATTCTGCGCGAAATGGTTGAGGAGGACAAGTCTAAATCATTCCATATGATATTGAAAAATGAAAAAGCTTCAACAAACAGAGAGCAGAGGACCATCCAAAGTTAA 3948 0.3949 MGRKRIVHQSNHPFASYPFEAYISGSWQSVEFITIESGTLFMHLKNKYPVAMEKGPFSDIRVKSRKAVLSDCSSFLRPGMDISVLSPPKQTNNSDEINLKPVRLDARISSIQRKPHSSECQCQFYVNFYVNQGSLGTELRTLRKEVKVFTINEISILQKLEHNPCENEYYRWTSSEDCPALPNTKLLLGKFLADISWLVVASFVKKVMFCVRTVKDKLVYQILESEIAESSLYTESTINVVSFTLNEEDGLLVSNVSQVVTAKPEAIEYVHESHEEKVSPSSYNVEGLRRSKRRHVQPERYLGYSDVTEFDVGSFRTQPPLKIETAAKGDDEFTLPLSCMLTLKQKPLQEDVDNSQNFSRMNTSGELLEYSRRKRPKTKKPKSIRSHQNEHKNQLAIIPLPDVGEPISVEHCDLNDNVSVSHGHESFDTPLNIYHHHLASSSKQKCKNVNLLTFEPNSLPAKANHAEKSDELTSRSHFGYSISNLQRKDSFVMDDMDLGGTKWEGISFSKGVQEKTYHPTYSRSRNPEEEKTYKDRTLNATAYKDLINSYLMNIDVKPTEEPPVTDQWKQFQETSGFSGIKETETEIFDEEDEDDEESEIDMLWQEMEVSLASCYLQDTEGVNAVNQAETVEKLKQGCPHDERMDDQIGIHCRICGHVFVDITNIFPPFLERPDRHREDKQCSGEDSDLERKADEDDDYHLFSANAPPGDEPKTEESENVWALIPELRPKLHAHQKKAFEFLWQNIAGSMEPSLMKTDSKKIGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWKIPIPVYLIHGRRTYRVFNQKNSMVFPGIPKPTEDVKHVLDCLEKIKNWHSQPSVLIMGYTSFLTLMREDSKYAHRKYMAKVLRESPGMLILDEGHNPRSTKSRLRKVLMKVHTDLRILLSGTLFQNNFCEYFNTLYLARPKFAKEVLKQLDPKYKRKKKKGTNYESRARKLFLDTIARKIDSNDNEERIEGLNMLRNVTHGFIDVYEGGSSDGLPGLQIYTLLMNPTETQHEMLHTLHQKMGQSNGYPLEIELLITLGSIHPWLIKTAVCSEKFFSNEQLMDLEKCKFDLKIGSKVKFVLSLIYRVVKNEKVLIFCHNIAPVKLFLEYFERYFRWQRGREVLVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVSGSLEEDKYKRTTWKEWVSNMIFSEDFVEDPSQWQANKLEDDILREMVEEDKSKSFHMILKNEKASTNREQRTIQS 1315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0220 1315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1027 1290 IPR027417 -
Lal6g0220 1315 MobiDBLite consensus disorder prediction 371 390 - -
Lal6g0220 1315 Gene3D - 1030 1315 IPR027417 -
Lal6g0220 1315 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 756 956 IPR014001 -
Lal6g0220 1315 CDD DEXHc_ATRX-like 731 957 - -
Lal6g0220 1315 MobiDBLite consensus disorder prediction 674 701 - -
Lal6g0220 1315 MobiDBLite consensus disorder prediction 674 716 - -
Lal6g0220 1315 Gene3D - 708 995 IPR038718 -
Lal6g0220 1315 Pfam SNF2-related domain 738 1008 IPR000330 GO:0005524|GO:0140658
Lal6g0220 1315 SMART ultradead3 727 965 IPR014001 -
Lal6g0220 1315 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 19 1306 - -
Lal6g0220 1315 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 1306 IPR044567 GO:0080188
Lal6g0220 1315 CDD SF2_C_SNF 1102 1238 - -
Lal6g0220 1315 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1113 1279 IPR001650 -
Lal6g0220 1315 Pfam Helicase conserved C-terminal domain 1110 1226 IPR001650 -
Lal6g0220 1315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 720 971 IPR027417 -
Lal6g0220 1315 SMART helicmild6 1142 1227 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0220 Lal-Chr6 1465087 1472790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0220 1106 1245 RAD5 or RAD16-like Gene Family AT5G43530 35.664 6.54e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal6g0220 SNF2_N 5.9e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0220 K10875 - gmx:100811703 1714.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0220 6 1465087 1472790 Lal6g0220 6 1465087 1472790 ECH
Lal22g0209 22 1285130 1293213 Lal6g0220 6 1465087 1472790 LSH