Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0218 ATGGAGAACCAAACCCTGTCTTCAACATCCTTTTATTACCAAAACCCTTGTCAGATTTTGCAACATGTTTCTCATGATGTTATGGAGAGACACAAATGGAAGATTAAGCCTGAAAACCACAACCCTTTTCATTTTTTCTGGTTGTTTTCCTTGGTTCAATGTCTTTTGCTTCTTATGCTCACAGTGAAGCCAGTGTTGGGTGATGAACATTGGGATGGTGTGATTGTTACACAGTCAAACTTCTTGGCACTTCAAGCATTCAAGCAAGAGTTGGTTGATCCAAAAGGCTTCTTGAGAACCTGGAATGACAATGGCTATGGAGCTTGTAATGGAAGTTGGGTTGGTATCAAGTGTGCTAAAGGTCAGGTCATTGTAATCCAGCTTCCTTGGAAGGGGTTAAGGGGTCATATCACTGATAGTATTGGTCAACTTCAAGGGCTTAGAAAGCTCAGTCTTCATGATAACCAAATCGGTGGTTCAATCCCTTCAGCATTGGGACTTCTTCCGAATCTGAGAGGGGTTCAACTATTCAACAATATGTTCACTGGTTCCATCCCTTCTTCTTTAGGTTTCTGTCCTTTACTTCAGTCCTTAGACCTCAGTAACAACTTGCTCAAAGGCACAATCCCTGGTAGCCTTGGCAATTCCACTAAGCTTTATTGGCTTAACTTGAGCTTCAATTCCTTATCTGGTCCAATACCATCTACCCTATCACACTCAGCTTCTCTTACATTCCTTTATCTTCAACACAATAATCTCTCTAGCTCTATTCCTAACTCATGGGGTGGTAGCCTAATCAGAGAAATTTCTCTTAGTCATAATCAGTTCAGTGGAGCAATACCTAATGAAATAGGAAGCCTTTCTAGGCTTAGGACAATAGATTTTTCTAATAATGCTTTGAATGGAAGCTTACCTGATACACTCTCTAATTTAACCTCACTCGCTCTATTGAATGTAGAGAACAACCACCTTGGCAATAAAATTCCAGAAGCTTTAGGCAGATTACACAACCTTTCTGTTCTGATTTTGAGCAGGAACCAATTTAGTGGCCACATTCCTCAAATCATTGGAAACTTTTCTACCATTACACAGCTTGATTTGTCACTGAATAATCTAGATGGAGAAATTCCAGTCTCTTTTAACAATCTAAGTGATCTTAATTCCTTCAATGTTTCTTATAACAACCTCTCTGGTCCAGTTCCCACTCTACTTGCCAAAAAATTTAACTCAAGCTCATTTGCAGGAAATATTCAATTATGTGGGTACAGCCCTTCAACTCCATGCCCTTCAAAAGCACCTTCTGAAGGGCAAGGAGTCCTATCGCCACATCCTGAGAAATCAAAACATGGCAACCATAAGAAACTAGGTACCAAAGACATAATTCTCATAGCTGCAGGAGTACTCCTGGCAGTGGTTATAACTCTATGCTGCATACTGATCTTCTGTCTCTTTAGAAGAAGGTCAACATCAAATGCTGAGAGTGGCCATGCCACAGGTAGAGCTGCTTCTGTCAGGACTCAAAAAGGAGTCCCTCCTGTGGCTGGTGAAGTTGAAGCAGGTGGTGACAATGGAGGGAAACTAGTCCATTTTGATGGACCACTGGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCAGAGATAATGGGAAAGAGCACATATGGAACTGTGTATAAGGCTACATTAGAAGATGGAAGTCAAGCTGCAGTGAAAAGATTGAGGGAAAAGATCACTAAAGGGCAGAGAGAATTCGAATCCGAAGTTAGTATTCTAGGGAGAATTCGGCATCCAAATCTTTTGGCACTAAGAGCCTATTATTTGGGACCAAAAGGAGAAAAGCTTCTGGTCTTTGATTACATGCCTAAAGGAAGCCTTGCTTCTTTCCTACATGCTCGCGGGTCTGAAACAATCATCGATTGGCCAACGAGGATGAAAATAGCACAGGGTATGGCTGGTGGCTTGTTTTACCTTCATTCCCATGAGAACATTGTACACGGGAACCTTACATCTAGCAATGTATTGCTTGATGAGAATACAAATGCAAAAATAGCCGATTTTAGTCTCTCGCGGTTAATGACAACCGGTGTTAACTCTAATGTGATTGCAACTGCTGGAGCCTTGGGATACCGAGCACCCGAACTCTCAAAGCTGAAGAAAGCCAACACAAAAACTGATGTATACAGTCTTGGTGTTATCTTGTTAGAACTCCTAACGGGGAAGCCACCTGGTGAGGCTATGAATGGTGTGGATTTACCTCAGTGGGTTGCTTCCATTGTCAAAGAGGAGTGGACGAATGAGGTTTTCGACACTGAATTGATGAGAGATTCATCAACAAATGGTGATGAGTTGCTAAACACTTTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCGCGGCCAGAAGCTCAGCAAGTTCTGCAGCAGCTACAACATATTAGACCAGAGGCAGAGGTATCATACAGTTCTGGTGATGATTTTGCTATACCTTCAACTAGTGAATAA 2508 0.4187 MENQTLSSTSFYYQNPCQILQHVSHDVMERHKWKIKPENHNPFHFFWLFSLVQCLLLLMLTVKPVLGDEHWDGVIVTQSNFLALQAFKQELVDPKGFLRTWNDNGYGACNGSWVGIKCAKGQVIVIQLPWKGLRGHITDSIGQLQGLRKLSLHDNQIGGSIPSALGLLPNLRGVQLFNNMFTGSIPSSLGFCPLLQSLDLSNNLLKGTIPGSLGNSTKLYWLNLSFNSLSGPIPSTLSHSASLTFLYLQHNNLSSSIPNSWGGSLIREISLSHNQFSGAIPNEIGSLSRLRTIDFSNNALNGSLPDTLSNLTSLALLNVENNHLGNKIPEALGRLHNLSVLILSRNQFSGHIPQIIGNFSTITQLDLSLNNLDGEIPVSFNNLSDLNSFNVSYNNLSGPVPTLLAKKFNSSSFAGNIQLCGYSPSTPCPSKAPSEGQGVLSPHPEKSKHGNHKKLGTKDIILIAAGVLLAVVITLCCILIFCLFRRRSTSNAESGHATGRAASVRTQKGVPPVAGEVEAGGDNGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQAAVKRLREKITKGQREFESEVSILGRIRHPNLLALRAYYLGPKGEKLLVFDYMPKGSLASFLHARGSETIIDWPTRMKIAQGMAGGLFYLHSHENIVHGNLTSSNVLLDENTNAKIADFSLSRLMTTGVNSNVIATAGALGYRAPELSKLKKANTKTDVYSLGVILLELLTGKPPGEAMNGVDLPQWVASIVKEEWTNEVFDTELMRDSSTNGDELLNTLKLALHCVDPSPSARPEAQQVLQQLQHIRPEAEVSYSSGDDFAIPSTSE 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0218 835 CDD STKc_IRAK 549 814 - -
Lal6g0218 835 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 18 264 - -
Lal6g0218 835 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 267 823 - -
Lal6g0218 835 SUPERFAMILY Protein kinase-like (PK-like) 547 816 IPR011009 -
Lal6g0218 835 Gene3D Ribonuclease Inhibitor 78 236 IPR032675 -
Lal6g0218 835 SMART LRR_typ_2 144 168 IPR003591 -
Lal6g0218 835 SMART LRR_typ_2 287 310 IPR003591 -
Lal6g0218 835 SMART LRR_typ_2 311 335 IPR003591 -
Lal6g0218 835 SMART LRR_typ_2 241 264 IPR003591 -
Lal6g0218 835 SMART LRR_typ_2 192 216 IPR003591 -
Lal6g0218 835 MobiDBLite consensus disorder prediction 431 452 - -
Lal6g0218 835 Pfam Protein tyrosine and serine/threonine kinase 546 811 IPR001245 GO:0004672|GO:0006468
Lal6g0218 835 Pfam Leucine rich repeat N-terminal domain 82 118 IPR013210 -
Lal6g0218 835 Gene3D Ribonuclease Inhibitor 237 328 IPR032675 -
Lal6g0218 835 Gene3D Transferase(Phosphotransferase) domain 1 621 828 - -
Lal6g0218 835 Gene3D Phosphorylase Kinase; domain 1 549 620 - -
Lal6g0218 835 ProSiteProfiles Protein kinase domain profile. 543 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0218 835 SUPERFAMILY L domain-like 113 420 - -
Lal6g0218 835 Gene3D Ribonuclease Inhibitor 329 437 IPR032675 -
Lal6g0218 835 Pfam Leucine rich repeat 194 253 IPR001611 GO:0005515
Lal6g0218 835 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 267 823 - -
Lal6g0218 835 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 18 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0218 Lal-Chr6 1447656 1451768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0218 71 816 Receptor kinase-like Gene Family AT3G51740 62.710 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lal6g0218 PK_Tyr_Ser-Thr 8.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0218 - - aprc:113851294 1234.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0218 6 1447656 1451768 Lal18g1394 18 16204129 16207133 ECH
Lal6g0218 6 1447656 1451768 Lal6g0218 6 1447656 1451768 ECH
Lal18g1394 18 16204129 16207133 Lal6g0218 6 1447656 1451768 LSH
Lal17g1595 17 17334473 17337833 Lal6g0218 6 1447656 1451768 PCT
Lal6g0218 6 1447656 1451768 Lal17g1595 17 17334473 17337833 PCT