Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0202 ATGCGGAAAAGAGAAAGGGAAAACCCTTGTGCAGTGTGCGGCCACTATCACAAGTATGAGGAAGGCGAAGTGTGTTCAATCTGCGGCCACCGGTTGATGGTTGGAGAGAAAACTTCGGTGCAAGTTAGTGCCTTCCCGTCGGTGATATTGCCGGAGTTTCTTTACCTCGGAAGCTATGACAACGCTTCACGCTCTGAGCTTCTCAAGACTCAGGGAATCACTCGTATCCTCAATACTGTCCCTTGTCAAAATCTCTACAAGAACTCATTTACCTATCACTGCCTCCCAGACGGCAAAACTTTGCCATTTGATGAAGGAATTCAGTTTTTAGAGCAATGCGAGAAGGATAAGGCTCGTGTGCTGGTTCATTGCATGTCAGGAAAGAATAGGTCTCCAGCTATTGTGATTGCGTACATGATGAAGTCCAAAGGATGGAGACTTGCACAGTGCTATCAGTGGGTAAAGGAACGGAGACCGTCTGTTGAATTAACCGAAGGTGTTTACCAGCAACTGCAGGAGATAGAGAACAAGATCTTTGGATCAAATGATGGTGGAAGCTCTGTGCTGCCCAGTTTCCCACCTGCAAGTTCAATTAGCTTTGGTTTCCCAAAGATCAATGATTCACCTCCGCTTCTTGCCTTCAGCGGTGTTGAAACTACTTCAATTTTCACCCGACCATCCCTAGCCATTGCTCCAACCGCTTTTACATTCGGAGCTGTTCAGCCGCAGAGTAGCGCGACTGGGAGCTCATATAGTGCAAATCCACCTAATCCAGATGGTACCAATATCCAAATGGATGGTTCTTGA 807 0.4696 MRKRERENPCAVCGHYHKYEEGEVCSICGHRLMVGEKTSVQVSAFPSVILPEFLYLGSYDNASRSELLKTQGITRILNTVPCQNLYKNSFTYHCLPDGKTLPFDEGIQFLEQCEKDKARVLVHCMSGKNRSPAIVIAYMMKSKGWRLAQCYQWVKERRPSVELTEGVYQQLQEIENKIFGSNDGGSSVLPSFPPASSISFGFPKINDSPPLLAFSGVETTSIFTRPSLAIAPTAFTFGAVQPQSSATGSSYSANPPNPDGTNIQMDGS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0202 268 ProSiteProfiles Dual specificity protein phosphatase domain profile. 45 180 IPR020422 GO:0006470|GO:0008138
Lal6g0202 268 Gene3D Protein tyrosine phosphatase superfamily 31 181 IPR029021 -
Lal6g0202 268 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 182 IPR029021 -
Lal6g0202 268 MobiDBLite consensus disorder prediction 245 268 - -
Lal6g0202 268 ProSitePatterns Tyrosine specific protein phosphatases active site. 122 132 IPR016130 GO:0016311|GO:0016791
Lal6g0202 268 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 101 169 IPR000387 GO:0016311|GO:0016791
Lal6g0202 268 SMART dsp_5 45 177 IPR020422 GO:0006470|GO:0008138
Lal6g0202 268 Pfam Dual specificity phosphatase, catalytic domain 54 176 IPR000340 GO:0008138|GO:0016311
Lal6g0202 268 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 268 - -
Lal6g0202 268 CDD DSP_plant_IBR5-like 46 173 - -
Lal6g0202 268 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 268 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0202 Lal-Chr6 1379220 1383809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0202 1 164 Protein tyrosine phosphatase (PTP) family AT2G04550 73.964 2.22e-93 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0202 K04459 - gmx:100808721 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1411 18 16271801 16275501 Lal6g0202 6 1379220 1383809 LSH
Lal22g0193 22 1208517 1212764 Lal6g0202 6 1379220 1383809 LSH