Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0196 ATGCCAGAAAACATACACCCTCTCAGGAATTCTGCTTCTAATCACTCCGGTGATAACATTGAAGAAGCCATTCAGCGTTTGAAAATCAATGATAATCGGGATAGAGATGGTGCATCTAAATCTTCCCCATTCCCAGAACGACCTGGTGAACCTGACTGCTTATATTATTTGAGGACTGGAATGTGTGGTTATGGGAGTAACTGCCGCTATAATCACCCGGCTAATGTTTCACCGGGTACTCATTATGGTGAAGAACTCCCTGAGAGAATTGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGTTCAACATGTAAATATCATCATCCAAGGTATAGGCAAGGTGCTGCTCCTGTATCATTCAATTCTCTAGGTCTTCCTGTACGTCAGGAAGAAAAACCATGTCCATATTACATGAGAACTGGGTCTTGTAAGTTTGGAGTCGCATGCAAGTTTCATCATCCACAGATTGGAGCTTCCCCTGTGGCTGGATCTCCTACCTCAACATTTATTCCAACATCTGGCTTACCATATGTTGGTGGGTTTTCTGCATTGCAAATGTCATATTTATCTGGGCAGGGCATTCAATCTTATGTGCCACCTTTTCTGTCTTCTCCACAAGGCATTATACCTGCACAGAACTGGAACACCTACATGGGAAGTATGAGCTCTGCATTGCCTACCGCTTTTCTTGGATCTAATTTTGTTTACGACACCATGAATCTGGGTGAATCAGTTCTTGGTGGTCAGGTAATAAGTCCAACTCTCCCTGAGAGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGTACCTGCAAATATGGATCTGATTGCAAGTATCATCATCCAAAAGAAAGAATTGCTCAATCATTGATGAACACACTTGGTCTTCCTGTCAGACCTGGGCATGCTATATGTTCTTACTATAGACTCTATGGAATATGCAAGTTTGGGCCAACATGCAAATTTGATCATCCAGTTTTGGCTATGTCTCAGAACTATGGCTTGACCTCACCTTCTTTTCCTGCACTTGATACATCTCTGATTAGTAATCGGACAAGTTTTTCAACTGTCCAACCACCTGAGACATCTCCATCTAAATTATCAAATGACAAGATTCAACACTCTGATACAAAAGCTACTGAAGATTCATCCAAAGAAGCTGATACTACTACATCCCAGCCACCTCACAGTCTTAATTTACATGACTAA 1233 0.4177 MPENIHPLRNSASNHSGDNIEEAIQRLKINDNRDRDGASKSSPFPERPGEPDCLYYLRTGMCGYGSNCRYNHPANVSPGTHYGEELPERIGQPDCEYFLKTGTCKYGSTCKYHHPRYRQGAAPVSFNSLGLPVRQEEKPCPYYMRTGSCKFGVACKFHHPQIGASPVAGSPTSTFIPTSGLPYVGGFSALQMSYLSGQGIQSYVPPFLSSPQGIIPAQNWNTYMGSMSSALPTAFLGSNFVYDTMNLGESVLGGQVISPTLPERPDQPECRYFMSTGTCKYGSDCKYHHPKERIAQSLMNTLGLPVRPGHAICSYYRLYGICKFGPTCKFDHPVLAMSQNYGLTSPSFPALDTSLISNRTSFSTVQPPETSPSKLSNDKIQHSDTKATEDSSKEADTTTSQPPHSLNLHD 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0196 410 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Lal6g0196 410 MobiDBLite consensus disorder prediction 394 410 - -
Lal6g0196 410 SUPERFAMILY CCCH zinc finger 267 293 IPR036855 GO:0046872
Lal6g0196 410 Gene3D - 46 123 - -
Lal6g0196 410 Gene3D - 261 347 - -
Lal6g0196 410 PANTHER PROTEIN PHOSPHATASE RELATED 9 397 - -
Lal6g0196 410 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 9 397 - -
Lal6g0196 410 SUPERFAMILY CCCH zinc finger 94 116 IPR036855 GO:0046872
Lal6g0196 410 MobiDBLite consensus disorder prediction 379 393 - -
Lal6g0196 410 Gene3D - 124 166 - -
Lal6g0196 410 SUPERFAMILY CCCH zinc finger 133 161 IPR036855 GO:0046872
Lal6g0196 410 MobiDBLite consensus disorder prediction 28 47 - -
Lal6g0196 410 SUPERFAMILY CCCH zinc finger 309 334 IPR036855 GO:0046872
Lal6g0196 410 MobiDBLite consensus disorder prediction 361 410 - -
Lal6g0196 410 MobiDBLite consensus disorder prediction 361 378 - -
Lal6g0196 410 ProSiteProfiles Zinc finger C3H1-type profile. 307 335 IPR000571 GO:0046872
Lal6g0196 410 MobiDBLite consensus disorder prediction 1 21 - -
Lal6g0196 410 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Lal6g0196 410 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Lal6g0196 410 ProSiteProfiles Zinc finger C3H1-type profile. 264 292 IPR000571 GO:0046872
Lal6g0196 410 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Lal6g0196 410 SMART c3hfinal6 307 334 IPR000571 GO:0046872
Lal6g0196 410 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Lal6g0196 410 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Lal6g0196 410 SMART c3hfinal6 264 291 IPR000571 GO:0046872
Lal6g0196 410 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 161 IPR000571 GO:0046872
Lal6g0196 410 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 309 333 IPR000571 GO:0046872
Lal6g0196 410 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 266 291 IPR000571 GO:0046872
Lal6g0196 410 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Lal6g0196 410 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Lal6g0196 410 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0196 Lal-Chr6 1350908 1354969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0196 1 401 C3H Transcription Factor Family AT1G04990 46.747 2.70e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal6g0196 zf-CCCH 2.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0196 - - vra:106765262 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1420 18 16325588 16329479 Lal6g0196 6 1350908 1354969 LSH
Lal22g0185 22 1166850 1171295 Lal6g0196 6 1350908 1354969 LSH