Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0195 ATGCAAGTTTCAGAAGTTCAACAGCTCCAACTTCAAATTCAAGTCCAAAATCACAGACAGCATCATCACAACCAAGAGACACCGATATGCAAGAAGATCCAAGTGCAAGATGAGAACAACAAGGTGGTGGAAGCTGATGATTTCCTCATCCCACCCCTCAATTTCGCCATGGTTGATAATGGCATTTTCCGTTCAGGTTTCCCTGAACCGGTCAACTTCTCCTTCCTCCAAACTCTTCGGCTACGTTCCATTATATATCTATGTCCTGAACCATACCCAGAGGCCAACTTGGAGTTCCTCAAGTCAAACGGGATCAAGCTTTATCACTTTGGGATTGAGGGTCATAAGGAGCCTTTCGTAAACATTCCAGGGGACACAATCCGTGAAGCACTACAAGTTCTCCTTGATGTCAGGAACCACCCTATTATTATTCACTGCAAACGGGGAAAGCATCGAACAGGTTGTTTAGTAGGATGCTATAGAAAAATGCAAAAATGGTGCTTGTCATCAGTGTTTGATGAGTACCAGCGCTTTGCAGCTGCAAAAGCAAGAGTTTCAGATCAGAGGTTTGTAGAGTTGTTTGATATTTCCAGCATGAAGCATTTGCCTTTAACATTTTCATGTTTGAAGAGGTAA 636 0.4292 MQVSEVQQLQLQIQVQNHRQHHHNQETPICKKIQVQDENNKVVEADDFLIPPLNFAMVDNGIFRSGFPEPVNFSFLQTLRLRSIIYLCPEPYPEANLEFLKSNGIKLYHFGIEGHKEPFVNIPGDTIREALQVLLDVRNHPIIIHCKRGKHRTGCLVGCYRKMQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSMKHLPLTFSCLKR 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0195 211 ProSiteProfiles Dual specificity protein phosphatase domain profile. 54 208 IPR020422 GO:0006470|GO:0008138
Lal6g0195 211 PANTHER PHOSPHOTYROSINE PROTEIN PHOSPHATASES SUPERFAMILY PROTEIN ISOFORM 1 16 210 - -
Lal6g0195 211 CDD PFA-DSP_Siw14 49 195 - -
Lal6g0195 211 PANTHER TYROSINE-PROTEIN PHOSPHATASE 16 210 - -
Lal6g0195 211 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 196 IPR029021 -
Lal6g0195 211 Gene3D Protein tyrosine phosphatase superfamily 48 198 IPR029021 -
Lal6g0195 211 ProSitePatterns Tyrosine specific protein phosphatases active site. 144 154 IPR016130 GO:0016311|GO:0016791
Lal6g0195 211 PRINTS Plant and fungal dual specificity phosphatase signature 49 66 IPR020428 GO:0016791
Lal6g0195 211 PRINTS Plant and fungal dual specificity phosphatase signature 86 99 IPR020428 GO:0016791
Lal6g0195 211 PRINTS Plant and fungal dual specificity phosphatase signature 105 119 IPR020428 GO:0016791
Lal6g0195 211 PRINTS Plant and fungal dual specificity phosphatase signature 122 136 IPR020428 GO:0016791
Lal6g0195 211 Pfam Tyrosine phosphatase family 49 201 IPR004861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0195 Lal-Chr6 1331755 1336730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0195 45 211 Protein tyrosine phosphatase (PTP) family AT4G03960 77.246 4.29e-100 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0195 K18045 - gmx:100814279 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1433 18 16408076 16409667 Lal6g0195 6 1331755 1336730 LSH
Lal22g0183 22 1139249 1143259 Lal6g0195 6 1331755 1336730 LSH