Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0180 ATGAATGGTTCTGAAGTTGCAGCAGCAATGTCGGATGACATGCTGATGCAATTCTCTTCAAACTCTTCAAACCAATCGGATCAGTCTCTGCCTACAAAGATTGCAAAGCTGGAAGCTCGAATGGTGGGTCGGGGTTCCTCCAATGCTTCTCAGCAGTCAACTCGGTCCCCCGCTCCTTCTCCGGCTGCGAAATTTGCAGGTGTTGCTGAGAATATGGTTGAACCATCCACTTCAAGTGATTCTGATGACGATAATGGCGGGGAATTCTTAATACAAGCCAACACACTGAAGCGTAAAAAACATGAAGAACATGCCACCTCCAATGTTTTTGAGCGTGCTGAGGTTGTTACTGATGGAAGACAAACTACTTTGGAGGCTGCGGAGACAAAAACTAATGTTGATGTGAATAGAAAGAAACCTGGCCGTGGAAGAGGCGGTTCTGGTTCAAGTAGAGGCCGTGGTTCCAGAGTTAATGAGCAGACCAGAACACTGATTCCTCATTCAGCTGTGTTGGCTTTAAATGGTCAGATTGATAATGATGGAAGACTCAAAGATCAGTTTCTTAATGATAATTATGCTTCATTAGAGGAGGTGGTTGCGTCTTTACGTGCAAAAGTTGTTGCACTGGAGGAGGACTTGCGTAAATCAAAACAAGATACCTCTGACTATCAGAATCTCTGTCGGCAGTTAGAAAAGGAACTGAAAGACCTAACAGATCATGAGCAACAAATGAAGCCTAAGAGAACAAAGATAATATCTGATTTGCTGATATCATTTTCAAAGGCTGAGAGACAAGAAGCAAGGCTGAAAGTACGACAAGATTCTTTGAGACTTGGAAATATTGGTGTAATCAGAGCTGGAACTGTCATATCTGAGACCTGGGAAGATGGTCAAGCATTGAAGGATCTGAATGCCCAGCTTAGACAACTAATAGAAACGAAAGAAGCAATTGAACGGCAGCGCAAGTTATTTAAGAAAAAACAACCTGTTATAGCTTATTCAACTGTGTTTGTTTTGGCCTATTTTTTGGTTGAAGATAAGGGAGATGGTACAGATGCAGAGGCTGGATTACCGGAAGATGTTCTCATCCATGATGAAATCTACAAGTCTCGACTAGCTAGAAAAAAGCAGGAAGAAGAAATTATTCTGCGAGAGAGGGATCGCTACGAAATAGAGAAGGGGAAATTGATAAGGGAAATGAAACGCATTCGGGATGAAGATGGTTCACGGTTTAACAACTTTCAGATTCTCAATCATCGTTATGCCCTTCTAAATCTTCTTGGAAAGGGAGGATTCAGTGAGGTTTACAAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCTTGCAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAACAAAGTTACATACGACATGCAATTCGAGAATACAATATTCACAAGACCCTTGTGCATCATCACATTGTTCGTTTGTGGGACATCTTTGAGATTGATCACAATACATTCTGCACTGTTCTAGAGTACTGCAGTGGGAAGGATCTTGATGGTGTCCTTAAAGCAACACCTATATTACCTGAGAGGGAGGCTAGGGTCATTCTAGTTCAGGTTTTTCAAGGTCTTCTTTACATGAATAAAAGGACACAGAAGATTATCCATTATGATTTAAAACCTGGAAACGTTCTGTTTGATGAGTTTGGCATTGCCAAAGTGACTGATTTTGGTCTTAGCAAGATAGTGGAGGATGACGTCGGATCCCAGGGTATGGAACTTACATCTCAGGGTGCTGGAACATATTGGTATTTGCCCCCAGAATGCTTTGAGCTCAACAAGACTCCTCTTATATCATCAAAGGTTGATGTCTGGTCTGCTGGTATTTTGTTTTATCAAATGCTCTTTGGAAGACGTCCGTTCGGACATGACCAAACACAAGAGAGAATACTTCGCGAAGACACAATCATCAAGGCACGCAGAGTTGAATTTCCTTCTAGGCCTACTGTTTCTAATGAGGCAAAGGATTTGATTAGACGGTGCCTAACATATAATCAGATTGAGAGACCAGATGTGTTAACCATTGCTCAAGATCCATATCTCACTTACTCAAAGAAGTAA 2100 0.4167 MNGSEVAAAMSDDMLMQFSSNSSNQSDQSLPTKIAKLEARMVGRGSSNASQQSTRSPAPSPAAKFAGVAENMVEPSTSSDSDDDNGGEFLIQANTLKRKKHEEHATSNVFERAEVVTDGRQTTLEAAETKTNVDVNRKKPGRGRGGSGSSRGRGSRVNEQTRTLIPHSAVLALNGQIDNDGRLKDQFLNDNYASLEEVVASLRAKVVALEEDLRKSKQDTSDYQNLCRQLEKELKDLTDHEQQMKPKRTKIISDLLISFSKAERQEARLKVRQDSLRLGNIGVIRAGTVISETWEDGQALKDLNAQLRQLIETKEAIERQRKLFKKKQPVIAYSTVFVLAYFLVEDKGDGTDAEAGLPEDVLIHDEIYKSRLARKKQEEEIILRERDRYEIEKGKLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHHHIVRLWDIFEIDHNTFCTVLEYCSGKDLDGVLKATPILPEREARVILVQVFQGLLYMNKRTQKIIHYDLKPGNVLFDEFGIAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELNKTPLISSKVDVWSAGILFYQMLFGRRPFGHDQTQERILREDTIIKARRVEFPSRPTVSNEAKDLIRRCLTYNQIERPDVLTIAQDPYLTYSKK 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0180 699 SMART serkin_6 421 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0180 699 Pfam Protein kinase domain 422 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0180 699 MobiDBLite consensus disorder prediction 44 59 - -
Lal6g0180 699 Gene3D Transferase(Phosphotransferase) domain 1 412 699 - -
Lal6g0180 699 Coils Coil 372 406 - -
Lal6g0180 699 MobiDBLite consensus disorder prediction 17 66 - -
Lal6g0180 699 MobiDBLite consensus disorder prediction 132 159 - -
Lal6g0180 699 PANTHER BNAC09G36930D PROTEIN 10 699 - -
Lal6g0180 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672|GO:0006468
Lal6g0180 699 SUPERFAMILY Protein kinase-like (PK-like) 413 695 IPR011009 -
Lal6g0180 699 ProSitePatterns Protein kinases ATP-binding region signature. 427 450 IPR017441 GO:0005524
Lal6g0180 699 Coils Coil 192 243 - -
Lal6g0180 699 MobiDBLite consensus disorder prediction 17 32 - -
Lal6g0180 699 ProSiteProfiles Protein kinase domain profile. 421 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0180 699 Coils Coil 300 327 - -
Lal6g0180 699 CDD STKc_TLK 420 693 - -
Lal6g0180 699 PANTHER MIXED LINEAGE PROTEIN KINASE 10 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0180 Lal-Chr6 1237880 1246437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0180 404 699 MAP Kinase Kinase Kinase AT3G13530 26.756 1.49e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Lal6g0180 Pkinase 4.2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0180 K08864 - gmx:100805168 1116.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0180 6 1237880 1246437 Lal6g0180 6 1237880 1246437 ECH
Lal18g1445 18 16508503 16518106 Lal6g0180 6 1237880 1246437 LSH