Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0170 ATGGATGTTCAAGTGATAAACTCGGGAGAAGGAAGTGGCCGTCAAGCTATGATAGATGATAGGGAAGGTGAAGTTAATAATGCTGAAAACTCTGGATCTCATGTTGAGGTTGGGATTTCTGAGCCATACTTGGGCATGTCATTTGATTCAGAGGATGCTGCGAAGACTTTCTGCAATGAATATGCAAGACGTGTGGGTTTCGTCTCCAAAGCTGGCCCGCATAGTCGTTCTAAAGCTGATGGAGCAAATATGTATCGGGAATTTGTGTGTGGCGGGGAAGGTTTGAAAAAAAGGCTTACAGAAAGTTGTGATGCAATGATTAGGATAGAGCAAAAGGGTCAAAGTAGTTGGTTTGTTACAAAATTTGTGAAGGAGCATAGTCATTCCATGTCAGGTTCCAGTAAGGTTCATAATAATCGGCCACGTAAGCACTTTTCTAGTGTTGGAAGAACGATGCCCGAAACCTACCAAGGACTGGGGCTTGTTCCAAGTGGTGTAATGTATTCTATGGATGGGAATCGCAATTCAAATGAGAATCTTCATGGGATTAGGAACATTCCCGCAGCAGCTGCTCCTGTTGAAACAGGTCACCCTGTTAAAAATCCCACTGGTGCCACTTATGTATCTATGGACGCAAATCGCAATTCCAATGAGAGTCTTCACAGGATTAAGAACATATCTACAGCAGCTGCTGCTGTTGAAACAAGTCACCATGTTAGAAATTCCACATCAACGAATTGTACTGTTAGACCGCATATTCGAAAGAGGACGTTAGGGAGGGATGCTCAGAATCTGCTGGAGTATTTTAAGAAAATGCAGGCTGCAAACCCTGGTTTCTTTTATGCAATACAACTTGATGAAGATAATCATATGACTAACGTGTTTTGGGCAGATGCAAGATCAAGGACAGCTTACGGTCATTTTGGCGATATGGTTAATCTGGACACGACATACATAGCATATCAATACAGAGTGCCGTTTGCTCCATTCACTGGGATAAATCATCATGGTCAGAGGATTTTGTTTGGTTGTGCACTCCTTTTGGATGATTCCGAGGCTTCTCTTGTGTGGCTCATTAAGACATTTCTGACAGCAATGAATGACCGCCATCCTGTCTCCATAACAACTGATCAAGACAGAGCCATAAAGATAGCTGTTTCACAAGTTTTACCTCAAACCCGCCACTGTATAAGCAAGTGGCACGTGTTGCGAGAAGGCCAGGAAAAATTGGCCCATGTATGTCATATGCATCCAAAATTTCAGGTTGAACTTTATAATTGTATTAACCTGACAGAAACAATTGAGGAATTTGATTCATCTTGGAATTCTATCATCGATAAATATGAACTCAGAAGAAATGATTGGCTTCAGTCATTATACAACGCTCGTGCTCAATGGGTTCCAGCATATTTCCGTGATTCATTTTTTGCTGCAATATCTCCTAATCAAGGATTGGATGGTTCTTTTTTTGATGGTTTTGTCAATCAACAGACAACATTACCAATGTTCTTTAGGCAGTATGAACTAGCTTTGGAGAGCTGTCTTGAAAAAGAAATAGAATCAGATGTTGAGACAATTTGCACCACACCAGTTTTGAAGACACCTTCACCAATGGAGAAACAGGCTGCTGATCTTTATACACGGAAAATATTTTCGAAATTTCAAGAAGAACTAGTTGAAACTTTTGTTTATACTGCCAACAGAATTGACGAAGTTGGGCCAAACATCAAGTTCAGGGTTGCAAAATTTGAGGACGACCAAAAAGCATATATGGTCACAATAAACCATTCTGAGTTGAGAGCTAGCTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTTTGTAGGCATGTCCTAACTGTTTTCACTGTGACTAATGTGCTTACATTACCATCCCATTACATCCTAAAGCGGTGGACAAGGAATGCAAAAAACAGTGTCGGATTAGAAGAATGTGGTGCAGAATCACATGGACAGGAATCTGTGGCATCACGTTATAGCAATCTATGTCGGGAAGCCATCAGATATGCTGAGGAAGGCGCAATATCTGTGGAAACTTACAATGCTGCAATGAATGCTCTCAGAGAAGGTGGAAAGAAGGTTTCTGTCGTGAAGAGAAGTGTTGCCAAGGTTGCACCGTCTAGTTATCTAGTCGGTGGAACTGCTTATGATAACAAGAAAACCCCAGCTTCAGCATCAGATACAACCCCTCTTTTATGGCCACGGCAAGATGAAATAACAAGGAGATTTAATCTTAATGATGTTGGTGCTCCTGTTCAATCTGTCACTGATCTAAATTTACCACGGATGGCCCCAGTTTCTTTCCAGCGAGATGATAGCCCCACTGAAAATATGGTGGTTATTCCATGTCTGAAATCGATGACATGGGTGATGGAGAACAAAAACTCAACTCCAGGGAATAGAGTAGCTGTTATCAGTATGAAGTTGCATGATTATTGCAAGAATCCATCAACAGAATCTGAGGTTAAGTTTCAGCTCTCAAGAGTTTCTTTAGAACCAATGTTAAAGTCCATGGCTTACATCAGCGAACAGCTTTCAACACCAGCTAATAAGGTTGCTGTAATAAATCTCAAGCTCCAAGATGCCGAGACAACTTCTGGTCAGTCCGAAGTTAAGTTTCAGGTGTCCAGGGACACATTGGGTGCTATGCTACGGTCAATGGCCTATATTCGTGAGCAACTTTCTAGTGCTGTAATTCGTGAGCAACTTTCTTCTGTCGGTGTTGGTGATGTGCAGTCAGAACCTGTTCTGAAGAAGCATAGGAAGTGA 2790 0.4158 MDVQVINSGEGSGRQAMIDDREGEVNNAENSGSHVEVGISEPYLGMSFDSEDAAKTFCNEYARRVGFVSKAGPHSRSKADGANMYREFVCGGEGLKKRLTESCDAMIRIEQKGQSSWFVTKFVKEHSHSMSGSSKVHNNRPRKHFSSVGRTMPETYQGLGLVPSGVMYSMDGNRNSNENLHGIRNIPAAAAPVETGHPVKNPTGATYVSMDANRNSNESLHRIKNISTAAAAVETSHHVRNSTSTNCTVRPHIRKRTLGRDAQNLLEYFKKMQAANPGFFYAIQLDEDNHMTNVFWADARSRTAYGHFGDMVNLDTTYIAYQYRVPFAPFTGINHHGQRILFGCALLLDDSEASLVWLIKTFLTAMNDRHPVSITTDQDRAIKIAVSQVLPQTRHCISKWHVLREGQEKLAHVCHMHPKFQVELYNCINLTETIEEFDSSWNSIIDKYELRRNDWLQSLYNARAQWVPAYFRDSFFAAISPNQGLDGSFFDGFVNQQTTLPMFFRQYELALESCLEKEIESDVETICTTPVLKTPSPMEKQAADLYTRKIFSKFQEELVETFVYTANRIDEVGPNIKFRVAKFEDDQKAYMVTINHSELRASCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKNSVGLEECGAESHGQESVASRYSNLCREAIRYAEEGAISVETYNAAMNALREGGKKVSVVKRSVAKVAPSSYLVGGTAYDNKKTPASASDTTPLLWPRQDEITRRFNLNDVGAPVQSVTDLNLPRMAPVSFQRDDSPTENMVVIPCLKSMTWVMENKNSTPGNRVAVISMKLHDYCKNPSTESEVKFQLSRVSLEPMLKSMAYISEQLSTPANKVAVINLKLQDAETTSGQSEVKFQVSRDTLGAMLRSMAYIREQLSSAVIREQLSSVGVGDVQSEPVLKKHRK 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0170 929 Pfam MULE transposase domain 312 403 IPR018289 -
Lal6g0170 929 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 30 173 - -
Lal6g0170 929 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 235 843 - -
Lal6g0170 929 MobiDBLite consensus disorder prediction 129 148 - -
Lal6g0170 929 SMART 26again6 601 628 IPR006564 GO:0008270
Lal6g0170 929 ProSiteProfiles Zinc finger SWIM-type profile. 590 626 IPR007527 GO:0008270
Lal6g0170 929 Pfam SWIM zinc finger 596 624 IPR007527 GO:0008270
Lal6g0170 929 Pfam FAR1 DNA-binding domain 57 130 IPR004330 -
Lal6g0170 929 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 30 173 IPR031052 GO:0006355
Lal6g0170 929 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 235 843 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0170 Lal-Chr6 1191868 1200648 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lal6g0170 MULE 4.9e-19 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0170 - - gmx:100786516 1342.02