Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0162 ATGGCCAAGAAGCGAAAGCTCCGATCCTCCGACTCCGAACCGACAAAACAACCCGAACCTGAAACCCCATCCGAACAGGAACAACAAACCCTAGGAGGAGAGGGACTCGAACAAGAACAGCAATCCATAGATGAATACCAACAAACCAACATTCCCATCGATCAACCACCACCAAACGCCGAAGAAGATGAAGAAGAAGAAACCCTAGAAGATAAGAATCAGGAACAGGATGCTCAACCTTCCAACGATGCATCTCAACTGGTTAAGGTTGAAGTAAACGGTGACGACAACAACGACGAAGAGGAAGAAGAAGAAGAAGAAGACCTCGAATTGGAAGATGAGCCTGTCGAGAAGCTTCTAGAACCTTTCACCAAGGAGCAGCTCCATTCTCTCGTCAAGCAAGCACTAGAGAAGTTCCCTGATTTCGTCGAGAATGTTCGCCACCTGGCTGATGTGGACCCCTCTCACCGCAAAATCTTCATCCACGGCCTTGGCTGGGATGCAACCGCCGAAACCCTAACCTCTGTCTTCTCAAAGTACGGCGAGATCGAAGACTGCAAGTCTGTCACTGATAAGCTCTCTGGGAAATCCAAGGGCTATGCCTTTATCCTTTTCAAGCATCGTAGTGGGGCCCGCAACGCTCTGAAGCAGCCACAGAAGACGATTGGAAACCGAATCACATCGTGCCAATTGGCCTCTGCTGGACCTGTTCCTGCACCACCTCCTGTGGCTCCTGCGGTTTCTGAGTATACTCAAAGGAAGATTTTTGTTAGTAATGTGGGTGCTGACATTGATCCACAGAAGCTGCTCGAGTTCTTCAGGCAGTTTGGGGAGGTTGAGGATGGTCCTCTCGGTCTTGATAAGCAGACCGGGAAGCCCAAAGGGTTTGCACTTTTCGTGTATAAATCGGTGGATAGTGCAAAGAAAGCTCTGGAAGATCCCCAAAAGCAGTTTGAAGGGCATGTTTTGTATTGCCAGAAAGCTGTTGATGGCCCTAAGGGGAAACAAGGGTATCATCAGCAACCGTATCACCAACACAATCAGCAACAGCATCATTCCCACCACCATCACCAGCCCCACTATCAAAGGAAGGAGAGGAACAAATATACTTCAGGTGGGCCTGCACATGGTGGTGGGCACTTGATGGCACCATCAGGTCCTCCTGTTGGATACAATCCCGGAGTGCCGGGGGCTCAAGGGTTGAATCCTGTGCTTGGTCAGGCGTTGTCGGCTTTGCTTACAACCCAAGGAGCTGGGTTTGGACTTGGGAACTTGCTTGGAGGTCTTGGTGGTGCACCTATGAATCAGTCTGTTCCACCTGCTGGATATGGTAATCAGCCTGCTATGAACTATGGGAACCAGCAGGGGATGCAGCAGGGATACCAGAATCCTCAAATGGGGCAGAGCAGTGGTGTTAGGCCCCACCCTGGTGCTGGCGCCCCTTACATGGGTCGTTAG 1458 0.5075 MAKKRKLRSSDSEPTKQPEPETPSEQEQQTLGGEGLEQEQQSIDEYQQTNIPIDQPPPNAEEDEEEETLEDKNQEQDAQPSNDASQLVKVEVNGDDNNDEEEEEEEEDLELEDEPVEKLLEPFTKEQLHSLVKQALEKFPDFVENVRHLADVDPSHRKIFIHGLGWDATAETLTSVFSKYGEIEDCKSVTDKLSGKSKGYAFILFKHRSGARNALKQPQKTIGNRITSCQLASAGPVPAPPPVAPAVSEYTQRKIFVSNVGADIDPQKLLEFFRQFGEVEDGPLGLDKQTGKPKGFALFVYKSVDSAKKALEDPQKQFEGHVLYCQKAVDGPKGKQGYHQQPYHQHNQQQHHSHHHHQPHYQRKERNKYTSGGPAHGGGHLMAPSGPPVGYNPGVPGAQGLNPVLGQALSALLTTQGAGFGLGNLLGGLGGAPMNQSVPPAGYGNQPAMNYGNQQGMQQGYQNPQMGQSSGVRPHPGAGAPYMGR 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0162 485 MobiDBLite consensus disorder prediction 21 55 - -
Lal6g0162 485 MobiDBLite consensus disorder prediction 95 115 - -
Lal6g0162 485 MobiDBLite consensus disorder prediction 1 20 - -
Lal6g0162 485 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 472 - -
Lal6g0162 485 SUPERFAMILY RNA-binding domain, RBD 148 233 IPR035979 GO:0003676
Lal6g0162 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 234 IPR000504 GO:0003723
Lal6g0162 485 SUPERFAMILY RNA-binding domain, RBD 237 346 IPR035979 GO:0003676
Lal6g0162 485 SMART rrm1_1 158 230 IPR000504 GO:0003723
Lal6g0162 485 SMART rrm1_1 254 326 IPR000504 GO:0003723
Lal6g0162 485 MobiDBLite consensus disorder prediction 348 363 - -
Lal6g0162 485 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 472 - -
Lal6g0162 485 Coils Coil 59 79 - -
Lal6g0162 485 MobiDBLite consensus disorder prediction 1 115 - -
Lal6g0162 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 336 IPR000504 GO:0003723
Lal6g0162 485 MobiDBLite consensus disorder prediction 453 485 - -
Lal6g0162 485 CDD RRM_RBM24_RBM38_like 253 328 - -
Lal6g0162 485 CDD RRM_RBM24_RBM38_like 157 232 - -
Lal6g0162 485 Gene3D - 54 238 IPR012677 -
Lal6g0162 485 MobiDBLite consensus disorder prediction 453 470 - -
Lal6g0162 485 MobiDBLite consensus disorder prediction 330 394 - -
Lal6g0162 485 MobiDBLite consensus disorder prediction 78 92 - -
Lal6g0162 485 Gene3D - 244 378 IPR012677 -
Lal6g0162 485 MobiDBLite consensus disorder prediction 58 72 - -
Lal6g0162 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 323 IPR000504 GO:0003723
Lal6g0162 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 225 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0162 Lal-Chr6 1153064 1154521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0162 232 340 C2H2 Transcription Factor Family AT2G19380 31.193 1.42e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0162 K12741 - gmx:100783742 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1468 18 16651433 16655527 Lal6g0162 6 1153064 1154521 LSH
Lal22g0156 22 967588 969930 Lal6g0162 6 1153064 1154521 LSH