Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0157 ATGGCTCCTCTTCTTACAAAGAATACTTTAAGAAGAGTTGCAGCCTGGTGCAGATTTACAATTTGGAAGTCCCGTCTAAGAGAAAGAATGTCAAGTGGAGCAACTCACTGGTGTTACGCATGCAGGCAGCCAATCGTGCTTGAAGGGAGAGATGTCATCTGCCCTTACTGTGATGGAGGTTTCGTACAAGAACTCAATGAGATACAAGGAACTGCACCCCAATTTACTGTCCCGTCACAATTGGGAGAATCTCGTCAAATGCCTGACCTTTTTGATGCTATACATGCTTTTATGGGGCGGAGAGGTTCTGATCCTAGATTTGAGCTTATAGGTGCTGTTGATAATGTCACGAGGCAGAGAATGTCTGGAAGACATCCAAACTTTGATGTTAGAGGAAGGTATGGTTCTGTCCCAGTTCCTCCTGAACAGGGTTGGGGTGTTTATAGTTCTGGTCCTTATTTGATATTTCATGGTCAAGTTCCTGGATTCGCCTTGTCTAATGGCGGCCCAAGAGGTGGTCCAAGGCGCGTTGATTTTGGGGACTATTTTATGGGCCCTGGACTGGAAGAACTTATCGAACAACTCACCACAAATGATCGGCATGGTCCACCCCCAGCTGCACGTTCTTCAATTGATGCAATGCCTACTATTAGGATCACACAGGCACATCTTCGCTCAGATTCACACTGTCCAGTTTGTAAAGACAAGTTTGAACTCGGCTCTGAAGCCAGAGAGATGCCATGCAACCATATTTACCACTCTGACTGTATTGTTCCTTGGTTGATTCAGCATAACTCATGCCCTGTTTGCCGTGTTGAGCTGCCACCTCAAGGACATGCTTGTGCTCGTGGTAGTCGAAGCTCGGGAGGAAGGAATGCCAACAGCAACAGTGGCAGTGATAGTGGCTCCAGCGGCAGGGAGAATACCCATCAGAACCAAGGAAGGAGAAACCCATTATCATTTTTGTGGCCATTCCGTTCTTCCACCTCAAACAATAATAATAATTATACTCAAGGTAGGGGAAGCAGCTCTTCTTCAACCACTCCTGACCAGCATGATGGAACAAGCTATAGTGGATGGCCTTTTGATTATTAA 1095 0.4621 MAPLLTKNTLRRVAAWCRFTIWKSRLRERMSSGATHWCYACRQPIVLEGRDVICPYCDGGFVQELNEIQGTAPQFTVPSQLGESRQMPDLFDAIHAFMGRRGSDPRFELIGAVDNVTRQRMSGRHPNFDVRGRYGSVPVPPEQGWGVYSSGPYLIFHGQVPGFALSNGGPRGGPRRVDFGDYFMGPGLEELIEQLTTNDRHGPPPAARSSIDAMPTIRITQAHLRSDSHCPVCKDKFELGSEAREMPCNHIYHSDCIVPWLIQHNSCPVCRVELPPQGHACARGSRSSGGRNANSNSGSDSGSSGRENTHQNQGRRNPLSFLWPFRSSTSNNNNNYTQGRGSSSSSTTPDQHDGTSYSGWPFDY 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0157 364 SUPERFAMILY RING/U-box 210 277 - -
Lal6g0157 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 30 345 - -
Lal6g0157 364 PANTHER OS03G0351800 PROTEIN 30 345 - -
Lal6g0157 364 Pfam zinc-ribbon 35 65 IPR039525 GO:0061630
Lal6g0157 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 277 IPR013083 -
Lal6g0157 364 Pfam Ring finger domain 229 271 IPR001841 -
Lal6g0157 364 MobiDBLite consensus disorder prediction 279 364 - -
Lal6g0157 364 ProSiteProfiles Zinc finger RING-type profile. 230 271 IPR001841 -
Lal6g0157 364 SMART ring_2 230 270 IPR001841 -
Lal6g0157 364 MobiDBLite consensus disorder prediction 287 355 - -
Lal6g0157 364 CDD RING-H2_RNF126_like 230 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0157 Lal-Chr6 1126031 1127589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0157 174 286 C3H Transcription Factor Family AT5G01980 41.739 1.78e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0157 K11982 - gmx:100813674 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1480 18 16731185 16732192 Lal6g0157 6 1126031 1127589 LSH
Lal22g0146 22 918403 919401 Lal6g0157 6 1126031 1127589 LSH