Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0154 GCTAGGATTAAGAAAATTATGCAAGCGGACGAGGATGTAGGGAAGATTGCAATGGCTGTGCCTCTTCTAGTTTCTAAAGCACTAGAGCTATTTCTGCAAGATTTATGTGATCAAACATATGATATAACTGTGAGGAAGGGTGCAAAGACCATGAGTGCTGTCCATTTGAAGCAGTGTGTAAAAACTTTTAATGTCTTCGATTTTCTGGAAGATATTGTCAGCAAAGTTCCTGATCTAGGTGGCTCCGTTGCTTCTGGTGACGATTCTGCTGCTACCAAGAGGAGGAAAGTTGCTGAAGGTGGTGATAACGACAGCGACGAGGAGCAAAAGAGAAGTAAAATGCCAGAGCCTGGACATACTAGTGGCAGAGGAAGGGGCAAGGGCAGAGGAAGGGGCAAGGGCAGAGGTAGGGGTCGTGGCCGAGGAAGTCAAACAGTAGATCAAGGGATGGCTTCACACGTCAAATTTGAAGATGATTCTGATATATTGAACCAAAATGATAAGCACACTGAAAGCAATGAAAGCCTGGAAAATTTGCCAGAACCTGAAGAAGTTAAGCAAAGTTTTCCGGTTTGCAAACCAGCTGAAACCTGCATTCGAAATTTTGATTTAAATATGGAACCGGTTGAGAGCATGGATTCGTTAGACTTACCTACTCCAATCCCATCTAGTTCGCCTGGGAAACCAATCTCCGAAGAGAAGCATGAGGAATACCCTGGATGGTCCTTGTCGGATATGGAAAAAATAGTCATCGATCCCGTACAACTGGCCAACTTAAATAGAAAAATAGATGAAGATAAGGAGGATTATGATGAAGAAATGTAG 825 0.4327 ARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDQTYDITVRKGAKTMSAVHLKQCVKTFNVFDFLEDIVSKVPDLGGSVASGDDSAATKRRKVAEGGDNDSDEEQKRSKMPEPGHTSGRGRGKGRGRGKGRGRGRGRGSQTVDQGMASHVKFEDDSDILNQNDKHTESNESLENLPEPEEVKQSFPVCKPAETCIRNFDLNMEPVESMDSLDLPTPIPSSSPGKPISEEKHEEYPGWSLSDMEKIVIDPVQLANLNRKIDEDKEDYDEEM 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0154 274 MobiDBLite consensus disorder prediction 215 241 - -
Lal6g0154 274 MobiDBLite consensus disorder prediction 79 188 - -
Lal6g0154 274 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 273 - -
Lal6g0154 274 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 60 IPR003958 -
Lal6g0154 274 MobiDBLite consensus disorder prediction 89 123 - -
Lal6g0154 274 Coils Coil 256 274 - -
Lal6g0154 274 MobiDBLite consensus disorder prediction 124 138 - -
Lal6g0154 274 PANTHER HISTONE SUPERFAMILY PROTEIN 1 273 - -
Lal6g0154 274 SUPERFAMILY Histone-fold 7 77 IPR009072 GO:0046982
Lal6g0154 274 MobiDBLite consensus disorder prediction 152 181 - -
Lal6g0154 274 Gene3D Histone, subunit A 1 75 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0154 Lal-Chr6 1109133 1110800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0154 1 263 CCAAT-HAP5 Transcription Factor Family AT3G12480 40.141 1.42e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lal6g0154 CBFD_NFYB_HMF 2.5e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0154 K21752 - gmx:100814800 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0143 22 905686 910992 Lal6g0154 6 1109133 1110800 LSH