Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0145 ATGGCTTTCACACTAGACAAATGTGAAGATAACATTGTGTTCACTGTGGAGTCTCAGAAGTCAGTGCCAGCTCCATTCCTAACAAAGACATACCAACTTGTTGATGATCTTCACACTGACCATATTGTATCTTGGGGTAATGATGAAACCACATTTGTTGTGTGGAAACCCCCTGAGTTTGCTACAGATCTCCTTCCTAACTATTTTAAGCACAACAACTTCTCTAGCTTTGTTAGGCAGCTCAATACCTATGGTTTCAAGAAAGTAGTTGCTGATAGGTGGGAGTTCTCAAATGAATACTTCAGAAAAGGAGCTAAGCACCTTCTATGTGAAATCCATAGAAGAAAAACCCCTCATCATCATCAACAACAACACTACTACCATGATCAACCACAACAGTTCCTTCAACCAGATGAAGGTTTGTGTTGGATTAATACTCCACTTCAGTCTTGTAAACCAAGTAATGATATTTTAACAGCACTTTCTGAAGATAATCAAAAACTGAGGAGAAAGAACTACATGCTATTATCAGAACTCACTCGCATGAAGAAACTTTACAATGACATCATATATTTCATCCAAAACCATGTAAATCCTGCTCCTTTTGAACAAAGAAGCAACATTGTTATTCCAAAGCTAGTAGAATTGGATTCATTACCTCAGTCACCAAATGTTGCTGCTGTTATTAGACCAGCCAAGGGTCGCATTATGGAAAAGTCTTTGGTAGATTGTAGTGAGGATTGTGATAGTTATGTGAAGCTCTTTGGTGTTCCACTTAGTGGCAAAAAGAGAGTGCACTCAGATAACACTGCTTAA 816 0.3836 MAFTLDKCEDNIVFTVESQKSVPAPFLTKTYQLVDDLHTDHIVSWGNDETTFVVWKPPEFATDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFSNEYFRKGAKHLLCEIHRRKTPHHHQQQHYYHDQPQQFLQPDEGLCWINTPLQSCKPSNDILTALSEDNQKLRRKNYMLLSELTRMKKLYNDIIYFIQNHVNPAPFEQRSNIVIPKLVELDSLPQSPNVAAVIRPAKGRIMEKSLVDCSEDCDSYVKLFGVPLSGKKRVHSDNTA 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0145 271 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal6g0145 271 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal6g0145 271 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal6g0145 271 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4D 18 265 - -
Lal6g0145 271 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal6g0145 271 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Lal6g0145 271 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal6g0145 271 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 265 IPR027725 -
Lal6g0145 271 Gene3D - 18 117 IPR036388 -
Lal6g0145 271 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0145 Lal-Chr6 1046351 1047955 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0145 10 271 HSF AT1G46264 47.937 8.22e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal6g0145 HSF_DNA-bind 8.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0145 K09419 - gmx:100806150 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0145 6 1046351 1047955 Lal6g0145 6 1046351 1047955 ECH