Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0141 ATGGGCAATTGTTGCTCAGGTGGTGCTGAAGACCCAGCTGATATTTCTGACAAGGGAGACACAACCAACCAACAAACCAACAATCACAATGAAGATTCACCCACCACCCCACCACCACCATCATCAAAACCATCGCCGCCGACACCTTCTTCCAAGCCATCAAAACAATCCCCTATAGGTCCTGTCCTTGGAAGGCCAATGGAGGATGTGAAAACCACCTACAGCATTGGGAAGGAGCTAGGGAGAGGACAATTTGGTGTGACACATTTGTGCACACATAAAGCTACAGGAAAACAATATGCATGCAAGACTATAGCCAAGAGGAAGCTTGTGAACAAGGAGGACCTAGAAGATGTTAAGAGGGAGGTACAAATTATGCATCACCTTACAGGGCAGCCTAACATTGTGGAACTTGTTGGTGCCTTTGAGGACAAGCAATCTGTCAATTTGGTCATGGAGTTGTGCGCTGGTGGCGAGCTTTTTGATCGCATGATCGCTAAGGGACATTACACCGAGCGTGGCGCTGCTTCCTTGTTGAGAACCATTGTCCAAACTGTCCACACTTGCCATTCCATGGGTGTCATTCATAGGGATCTTAAGCCTGAGAATTTCCTCTTGTTGAACAAGGATGATGATTCACCCCTCCAGGCAACAGATTTTGGCCTATCAGTTTTTTACAAACAAGGAGAGGTGTTTAGAGACCTTGTTGGCAGTGCATATTACATTGCACCTGAGGTATTGAAGAGGAAATATGGGCCGGAAGTTGACATATGGAGTGTTGGTGTCATACTATACATTCTTTTATGTGGTGTTCCTCCATTCTGGGCAGAATCCGAAACTGGGATATTCAATTCTATCCTACGAGGTCACATTGACTTTACCAGTGATCCATGGCCCTCCATTTCACCTCAGGCAAAAGATCTGGTTAGGAAAATGTTGAATATGGATCCAAAGCAGAGGCTGACAGCACACGAAGTCCTCAATCATCCATGGATAAAGGAAGACGGAGAAGCACCAGATACACCTCTTGACAATGCAGTGCTCAATAGGCTCAAACAATTCAGAGCAATGGACCAATTCAAGAAAGTAGCTCTAAAGGTCATTGCTGGGTGCCTATCAGAGGAAGAAATAATGGGATTGAAGCAGATGTTCAAGGGGATGGACACCGACAACAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGTCTTGCAAAACAAGGAACTAAGTTGTCAGAACAAGAAGTTAAGCAATTAATGGAAGCTGCAGATGCAGATGGTAATGGAATCATTGATTATGATGAGTTCATCACAGCCACAATGCACATGAACCGAATGAACAGAGCAGACCATGTTTACACCGCATTCCAATACTTCGATAAAGATAACAGCGGGTACATCACCATTGAAGAACTAGAGCAAGCTCTCCATGAATATAACATGCATGACGGCAGGGACATCAAGGAAATCATTGATGAAGTTGATGCAGATAATGACGGGCGAATTAACTATGACGAGTTTGTAGCAATGATGAGTAAAGGACACCAAGAAGCAGTTCCTACCAAGAAAAGGCGTGATTCATTTGTTTCATAG 1593 0.4438 MGNCCSGGAEDPADISDKGDTTNQQTNNHNEDSPTTPPPPSSKPSPPTPSSKPSKQSPIGPVLGRPMEDVKTTYSIGKELGRGQFGVTHLCTHKATGKQYACKTIAKRKLVNKEDLEDVKREVQIMHHLTGQPNIVELVGAFEDKQSVNLVMELCAGGELFDRMIAKGHYTERGAASLLRTIVQTVHTCHSMGVIHRDLKPENFLLLNKDDDSPLQATDFGLSVFYKQGEVFRDLVGSAYYIAPEVLKRKYGPEVDIWSVGVILYILLCGVPPFWAESETGIFNSILRGHIDFTSDPWPSISPQAKDLVRKMLNMDPKQRLTAHEVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMDQFKKVALKVIAGCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGLAKQGTKLSEQEVKQLMEAADADGNGIIDYDEFITATMHMNRMNRADHVYTAFQYFDKDNSGYITIEELEQALHEYNMHDGRDIKEIIDEVDADNDGRINYDEFVAMMSKGHQEAVPTKKRRDSFVS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0141 530 ProSiteProfiles EF-hand calcium-binding domain profile. 411 446 IPR002048 GO:0005509
Lal6g0141 530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Lal6g0141 530 SMART efh_1 486 514 IPR002048 GO:0005509
Lal6g0141 530 SMART efh_1 379 407 IPR002048 GO:0005509
Lal6g0141 530 SMART efh_1 415 443 IPR002048 GO:0005509
Lal6g0141 530 SMART efh_1 451 479 IPR002048 GO:0005509
Lal6g0141 530 CDD STKc_CAMK 74 331 - -
Lal6g0141 530 ProSitePatterns EF-hand calcium-binding domain. 424 436 IPR018247 -
Lal6g0141 530 ProSiteProfiles EF-hand calcium-binding domain profile. 447 481 IPR002048 GO:0005509
Lal6g0141 530 ProSitePatterns EF-hand calcium-binding domain. 495 507 IPR018247 -
Lal6g0141 530 MobiDBLite consensus disorder prediction 33 54 - -
Lal6g0141 530 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Lal6g0141 530 Gene3D Transferase(Phosphotransferase) domain 1 160 339 - -
Lal6g0141 530 SUPERFAMILY Protein kinase-like (PK-like) 49 358 IPR011009 -
Lal6g0141 530 Pfam EF-hand domain pair 380 440 IPR002048 GO:0005509
Lal6g0141 530 Pfam EF-hand domain pair 451 512 IPR002048 GO:0005509
Lal6g0141 530 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 22 520 - -
Lal6g0141 530 ProSiteProfiles EF-hand calcium-binding domain profile. 482 517 IPR002048 GO:0005509
Lal6g0141 530 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Lal6g0141 530 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 520 - -
Lal6g0141 530 MobiDBLite consensus disorder prediction 1 68 - -
Lal6g0141 530 SUPERFAMILY EF-hand 372 512 IPR011992 -
Lal6g0141 530 ProSiteProfiles Protein kinase domain profile. 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0141 530 Gene3D - 340 517 - -
Lal6g0141 530 MobiDBLite consensus disorder prediction 18 32 - -
Lal6g0141 530 ProSitePatterns Protein kinases ATP-binding region signature. 80 107 IPR017441 GO:0005524
Lal6g0141 530 Gene3D Phosphorylase Kinase; domain 1 76 159 - -
Lal6g0141 530 Pfam Protein kinase domain 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0141 530 SMART serkin_6 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0141 Lal-Chr6 1029324 1034112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0141 1 528 EF-hand Containing Proteins AT5G12180 79.206 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal6g0141 Pkinase 1.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0141 K13412 - gmx:100820422 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0141 6 1029324 1034112 Lal6g0141 6 1029324 1034112 ECH
Lal18g1496 18 16837439 16839885 Lal6g0141 6 1029324 1034112 LSH
Lal22g0136 22 874939 877911 Lal6g0141 6 1029324 1034112 LSH