Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0130 ATGACTTCGGATCTTAACAGAATTGGTACTGTTGAAAGAGACATTGAGCAGGCCATTACCGCTTTAAAGAAAGGGGCTTACTTGCTCAAGTATGGAAGAAGGGGAAAGCCCAAGTTTTGCCCCTTTCGGCTTTCGAACGATGAATCTGTTTTGATATGGTTCTCGGGGAAAGAAGAGAAGCACCTTAAACTGAGCCATATCTCTAGAATTATATCTGGACAACGCACGAGATACCCTCGACCCGAGAAGGAATACCAATCTTTTTCTCTTATCTACAATGATAGGTCACTGGACTTGATTTGCAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGTTTGAAAGCATTAATTTCACGTAGCCATCATCGAAAGTGGAGGGCTGAGCCAAGAAGTGTTGGTGTTCCATCCGAAGCTAGTAGTCCTCGAACATACACCAGAAGAAGTTCACCTTTACATTCTCCGTTTGGTAGTAATGACAGCTTGCAAAAGGATAGCGTGGATCACCTTCGCCTTCGTAGCCCATATGAGAGCCCCCCTAAGAATGGTTTGGACAAAGCATTTTCTGATGTGGTTCTGTATGCTGTTCCTCCAAAGGGTTTCTTCCCTTCAGATTCTGCCAGTGGCTCGGTCCACTCTGTATCATCTGGAGGATCAGATAGTATGCATGGTCACATGAAAACAATGGGTTTGGATGCTTTTAGAGTTAGTCTATCAAGCGCTGTTAGCTCATCCAGCCAAGGTTCCGGTCATGATGATGGTGATGCTTTAGGGGATGTTTTCATTTGGGGAGAAGGCACTGGTGATGATGGTGTTTTGGGTGGTGGGACTCACCAAGTTGGGAGTTGTTTGGGTGTAAAAATGGATTCTCTATTTCCAAAAGCATTGGAATCTGCAGTAGTTCTTGATGTACAGAACATTGCTTGTGGTGGGCAACATGCAGCTTTGGTGACCAAACAAGGCGAATTTTTCTCATGGGGGGAGGAATCAGGAGGCAGGCTTGGGCATGGTGTTGAATCTGATGTTCTCCTCCCAAAGCTTATAGAATCTCTAAGTAATACAAATATCGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACGTGGGGTGATGGCACGTACAATTATGGTCTTCTGGGGCACGGAAATCAAGTGAGCCACTGGGTCCCAAAAAGAGTAAATGGACCTTTGGAGGGCATACGTGTTTCATCTATTTCTTGTGGACCATGGCATACTGCTGTTGTAACCTCTGCTGGGGAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCACGGAGACCGAAAAAATGTATCGTTACCAAGGGAAGTAGAGTCCCTCAAAGGTCTTCGTACTGTGCGGGCTGCTTGTGGGGTTTGGCATACTGCTGCAGTTGTTGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAGGGTCGACTTGGGCATGGTGATAAAGAAGCAAAACTTGTTCCAACCTGTGTTGCAGCCCTCGTTGAACCCAATTTTTGTCAAGTTGCTTGTGGACATAGTCTGACTGTTGCACTTACGACTTCAGGCCATGTCTATACAATGGGCAGTCCTGTTTATGGCCAGTTAGGGAATTCTCAAGCCAATGGGAAGCTACCAACCTGTGTAGAAGGAAAGCTTTCCAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCTTATCATGTTGCAGTTTTAACATCGAGGACTGAAGTCTACACTTGGGGGAAGGGTGCCAATGGTCGTTTAGGCCATGGGGATACTGATGATAGAAATACCCCAACATTAGTAGAAGCTCTGAAAGACAAACAGGTCAAAAGTGTTGCTTGTGGTACTAATTTCACTGCAGCTATCTGTCTGCATAAGTGGGTATCTGGTGTTGACCAGTCTATGTGTTCTGGTTGTCGTCTTCCATTTAATTTCAAAAGAAAGCGTCATAATTGTTACAACTGTGGACTTGTATTTTGCCATTCATGTAGCTGTAAGAAGTGTCTTAAGGCTTCCATGGCACCAAATCCTAACAAACCCTATCGTGTATGTGATAATTGTTTTAATAAACTAAGGAAAGCTATAGAAACTGATTCTTCATCTCATTCGTCTGTGAACAGAAGAGGAAGTATCAATCAGGGGTCACTTGAGTTAATTGATAAGGATGATAAATTGGATTCCAGATCTCGTAATCAACTTGCCAGATTTTCTTCAATGGAATCCTTTAAACAAGTGGAAAGCAAGTCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGTAGCCGTGTCTCACCTGTTCCAAATGGGGGTTCACAATGGGGAGCACTGAATATTTCTAAATCTTTAAATCCTGTTTTTGGATCATCAAAGAAGTTCTTCTCAGCTTCTGTTCCTGGATCTAGAATTGCTTCCCGAGCAACATCCCCAACATCTAGACGGCCTAGTCCACCTCGTTCAACTACTCCAACTCCAACACTAGGAGGTCTTACCTCACCGAAGATAGTTGTTGATGATGCTAAGAAGATGAATGATAGCCTTAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTAGGAAAGCCCAACTTCAAGAAATTGAGTTGGAAAGAACAACTAAACAGCTGAAAGATGCCATAGCAATTGCCGGGGAGGAAACAGCCAAATGCAAAGCAGCAAAAGAAGTGATCAAGTCGCTTACTGCCCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGAGCAGCTAGGAATGTCAAATCACCTTCTTCTATTGCTTCATTTGGTTCAACACCTGGTTCCAATGAAGTTAACTATGCTTCCATTGATCGGTTGAATATTCAAGCAACAAGCCCAGAAGCAGACTTAACTGGACCAAATAGCCGGTTACTTTCTAATGGATCAAGTACCATAAGTAACCGTAGTGCTGGTCACAATAAACAGATCCAGTCAGATGCAACTAATAGAAATGGGAGCAGAACGAAGGATAGTGATTCCCATAATGAGACAGAATGGGTTGAACAAGATGAATCTGGTGTATATATTACGCTCACCACCTTACCAGGAAGCGTAATAGAGCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTTAGTGAGAAGCAAGCTGAACAATGGTGGGGTGAGAATCGCGCAAGAGTATATGAGAAATATAATGTCCGTATGATTGACAAATCATCTGTTGGTGTTGGGAGTGAAGACCTAGCCCGTTGA 3303 0.4351 MTSDLNRIGTVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHISRIISGQRTRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRAEPRSVGVPSEASSPRTYTRRSSPLHSPFGSNDSLQKDSVDHLRLRSPYESPPKNGLDKAFSDVVLYAVPPKGFFPSDSASGSVHSVSSGGSDSMHGHMKTMGLDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDDGVLGGGTHQVGSCLGVKMDSLFPKALESAVVLDVQNIACGGQHAALVTKQGEFFSWGEESGGRLGHGVESDVLLPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIRVSSISCGPWHTAVVTSAGELFTFGDGTFGVLGHGDRKNVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNSQANGKLPTCVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNTPTLVEALKDKQVKSVACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSCKKCLKASMAPNPNKPYRVCDNCFNKLRKAIETDSSSHSSVNRRGSINQGSLELIDKDDKLDSRSRNQLARFSSMESFKQVESKSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSLNPVFGSSKKFFSASVPGSRIASRATSPTSRRPSPPRSTTPTPTLGGLTSPKIVVDDAKKMNDSLSQEVIKLRSQVENLTRKAQLQEIELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARNVKSPSSIASFGSTPGSNEVNYASIDRLNIQATSPEADLTGPNSRLLSNGSSTISNRSAGHNKQIQSDATNRNGSRTKDSDSHNETEWVEQDESGVYITLTTLPGSVIELKRVRFSRKRFSEKQAEQWWGENRARVYEKYNVRMIDKSSVGVGSEDLAR 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0130 1100 Gene3D - 13 127 IPR011993 -
Lal6g0130 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 321 372 IPR000408 -
Lal6g0130 1100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 720 IPR013083 -
Lal6g0130 1100 Pfam FYVE zinc finger 648 714 IPR000306 GO:0046872
Lal6g0130 1100 MobiDBLite consensus disorder prediction 206 222 - -
Lal6g0130 1100 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 652 714 IPR017455 -
Lal6g0130 1100 Gene3D - 239 490 IPR009091 -
Lal6g0130 1100 Gene3D - 491 658 IPR009091 -
Lal6g0130 1100 MobiDBLite consensus disorder prediction 760 796 - -
Lal6g0130 1100 CDD FYVE_like_SF 657 710 - -
Lal6g0130 1100 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 307 317 IPR000408 -
Lal6g0130 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 596 647 IPR000408 -
Lal6g0130 1100 SUPERFAMILY PH domain-like 14 118 - -
Lal6g0130 1100 MobiDBLite consensus disorder prediction 974 1014 - -
Lal6g0130 1100 MobiDBLite consensus disorder prediction 974 1029 - -
Lal6g0130 1100 MobiDBLite consensus disorder prediction 819 853 - -
Lal6g0130 1100 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 414 424 IPR000408 -
Lal6g0130 1100 Coils Coil 858 899 - -
Lal6g0130 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 544 595 IPR000408 -
Lal6g0130 1100 SMART fyve_4 646 715 IPR000306 GO:0046872
Lal6g0130 1100 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 16 1086 - -
Lal6g0130 1100 SMART PH_update 22 121 IPR001849 -
Lal6g0130 1100 Pfam Unstructured region between BRX_N and BRX domain 951 1020 - -
Lal6g0130 1100 MobiDBLite consensus disorder prediction 205 224 - -
Lal6g0130 1100 MobiDBLite consensus disorder prediction 137 163 - -
Lal6g0130 1100 CDD PH_PLC_plant-like 13 119 - -
Lal6g0130 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 258 320 IPR000408 -
Lal6g0130 1100 Coils Coil 914 934 - -
Lal6g0130 1100 PRINTS Chromosome condensation regulator RCC1 signature 261 277 IPR000408 -
Lal6g0130 1100 PRINTS Chromosome condensation regulator RCC1 signature 373 389 IPR000408 -
Lal6g0130 1100 PRINTS Chromosome condensation regulator RCC1 signature 414 430 IPR000408 -
Lal6g0130 1100 PRINTS Chromosome condensation regulator RCC1 signature 430 444 IPR000408 -
Lal6g0130 1100 PRINTS Chromosome condensation regulator RCC1 signature 533 551 IPR000408 -
Lal6g0130 1100 PRINTS Chromosome condensation regulator RCC1 signature 591 612 IPR000408 -
Lal6g0130 1100 MobiDBLite consensus disorder prediction 1015 1029 - -
Lal6g0130 1100 MobiDBLite consensus disorder prediction 128 164 - -
Lal6g0130 1100 MobiDBLite consensus disorder prediction 781 796 - -
Lal6g0130 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 372 424 IPR000408 -
Lal6g0130 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 428 476 IPR000408 -
Lal6g0130 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 321 369 IPR000408 -
Lal6g0130 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 543 592 IPR000408 -
Lal6g0130 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 597 644 IPR000408 -
Lal6g0130 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 491 540 IPR000408 -
Lal6g0130 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 428 479 IPR000408 -
Lal6g0130 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 492 543 IPR000408 -
Lal6g0130 1100 SUPERFAMILY FYVE/PHD zinc finger 648 719 IPR011011 -
Lal6g0130 1100 Pfam Transcription factor BRX N-terminal domain 909 942 IPR027988 -
Lal6g0130 1100 Pfam Transcription factor regulating root and shoot growth via Pin3 1026 1081 IPR013591 -
Lal6g0130 1100 ProSiteProfiles BRX domain profile. 1027 1082 IPR013591 -
Lal6g0130 1100 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1086 - -
Lal6g0130 1100 SUPERFAMILY RCC1/BLIP-II 258 649 IPR009091 -
Lal6g0130 1100 MobiDBLite consensus disorder prediction 819 836 - -
Lal6g0130 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 373 427 IPR000408 -
Lal6g0130 1100 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 466 476 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0130 Lal-Chr6 864959 874322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0130 918 1091 Major Intrinsic Protein MIP AT1G31880 33.511 5.25e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0130 - - gmx:100806439 1881.69