Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0129 ATGGAAGAATCATGTGAATTGCAATCAGAAGAAAATAATGTTTCCGCAGAGAAAAATAAGAAAAGAAAGCTCAAGACACCTGCCCAAGTTGCAGGCCTGGAGAAATTTTATAATGAGCATAAATATCCCACAGAAGAAATGAAATCGGAACTTGCTGTGGAGTTAGGGTTGACAGATAAACAAGTATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGTTGAAAGATGAAGCAGTTGCTAATTGCCGACAAGATCGTTCCAGCGGTGTCATCCAGGATCGTGGTAGTGGACTTGGCCAAGATTCATGTGGAAGCACTAAACATGGTGATTATAAGTATCTGGATCCCAAAGAGGTTGAGAGCCAAGGTATACACAATAATGATTTTTCAGCTGCAGATATGGCCTATGGACATAGGAACAAATTTACAGAAAATGTCAGTGAAATGGAGGACACTTCATCTGAGAGTAGCTCATATTTGCAAGATATGATGATCCCTCAAGGCCAGGATCCATATGATATGGAGTCTTCTAGATATCTAACATCTGCGAGAGCTCTTCCACCCCTAAATCCCAAGAGTGCAATTAACATGAGACATAAACCATCAGGATATTTGAAAGTGAAGGGTGAGATAGAAAATGCTGCTATAACTGCCATTAAGAAACAATTAGGAAGGAATTATCGGGAAGATGGTCCGCTACTCGGTGTAGACTTTGATCCTCTCCCTCCAGGGGCATTTGAAGGCCAAAATGCAGATCCAGTTCATGAACCATACAGTGTTGCAAATCCCACTCTTCCAAATTCTCCTGATATCTCCCCTGTAAAAAGGCAACCCGGTCTTAGCTCTAGATATCCTTCACATATGGAAGGGATTGACTTTGGCTCCTTGCACGGCGGCTCTGATTTGCAGGATATACAGGATAAGAAAGCTCGGCACAGTATAAAACAAAGACAGACCTTTTACAGTATCAATCACTTTCCTGCTAGGAACTCTTCCCTCGATTTGCTTGAAGATGATAATGGAGAACCATCTGCTTATAATTGCAGTAAGAATCATAGAATAGGCGTTATGCATGGTGTTGAAGGGATGAGATCTGATTCTACTTCCAACAATAGCGATCACTATGAAGAGAACCTCGTGGTTAAGCAGACAGACGTGCTGCCACATGGCTATGATAATCTCAATCTGAATAATGTCCAAAGGAGCAGACATGTCAAATCAAAGCCTTTACATTCAGTCCGTAATTCTCAAATTTCTGTTGATACTGAAGAAACAGGGCCACCTACTAGGATGGCAAAGGAGATGTTTAAGGGGAGTAGGAAGGCAAAAAACCAACAACGCAATGCAGATGGAGCAAGGATGCTTTCAAAAGAAATCATGGATGCAAAGAGAATTAAAGTTGATCCACTTCGATAG 1425 0.4119 MEESCELQSEENNVSAEKNKKRKLKTPAQVAGLEKFYNEHKYPTEEMKSELAVELGLTDKQVSGWFCHRRLKDKRLLKDEAVANCRQDRSSGVIQDRGSGLGQDSCGSTKHGDYKYLDPKEVESQGIHNNDFSAADMAYGHRNKFTENVSEMEDTSSESSSYLQDMMIPQGQDPYDMESSRYLTSARALPPLNPKSAINMRHKPSGYLKVKGEIENAAITAIKKQLGRNYREDGPLLGVDFDPLPPGAFEGQNADPVHEPYSVANPTLPNSPDISPVKRQPGLSSRYPSHMEGIDFGSLHGGSDLQDIQDKKARHSIKQRQTFYSINHFPARNSSLDLLEDDNGEPSAYNCSKNHRIGVMHGVEGMRSDSTSNNSDHYEENLVVKQTDVLPHGYDNLNLNNVQRSRHVKSKPLHSVRNSQISVDTEETGPPTRMAKEMFKGSRKAKNQQRNADGARMLSKEIMDAKRIKVDPLR 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0129 474 CDD homeodomain 20 75 IPR001356 GO:0003677
Lal6g0129 474 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Lal6g0129 474 MobiDBLite consensus disorder prediction 1 25 - -
Lal6g0129 474 MobiDBLite consensus disorder prediction 408 430 - -
Lal6g0129 474 MobiDBLite consensus disorder prediction 264 284 - -
Lal6g0129 474 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 471 - -
Lal6g0129 474 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 471 - -
Lal6g0129 474 MobiDBLite consensus disorder prediction 264 278 - -
Lal6g0129 474 Gene3D - 8 92 - -
Lal6g0129 474 SUPERFAMILY Homeodomain-like 18 83 IPR009057 -
Lal6g0129 474 SMART HOX_1 18 80 IPR001356 GO:0003677
Lal6g0129 474 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0129 Lal-Chr6 858452 863245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0129 3 274 Homeobox Transcription Factor Family AT4G03250 53.285 8.05e-79 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lal6g0129 Homeodomain 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0129 - - gmx:100803515 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1505 18 16909193 16914108 Lal6g0129 6 858452 863245 LSH
Lal22g0125 22 772385 778007 Lal6g0129 6 858452 863245 LSH