Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0127 ATGATGATGATGAAGGGGCTGATAGAGAAAGATTCACCTTCCATTCCAATTGTGGCTACTACGACGAGGTTGCCTTCTGATCCTGGTGGTGGTGGTGGTGCTTTTGCAGACTGGGCAGCTACTTCCTCCGCCGCTAACCGCTCTGTGGCGTCCCCCTCAGACGACTTATCCCTCGGCTTCAATGCTACCGGACCCACCACTGGTGGAATCTACTCCGGCGCCACCACTAGGTCAATCAATTACAACCTTGGACCACCCGAGATGGGCATGGTTGGCCTCCGTGATCTCTTTGTTGTGACACCCGCTTCTGCATTCCACCACCACCACCATGAACAAACACACTTCTCCGACCACCACCCTCATCATCATTCCATCAATAATAGTTCCAACCCTGCCACTGCACTCGGCGTCGGCATCATCCCCTTACTCGCTGCTACACCTTGCATCGACAATGAAACGATGACGAGTAACCGTAACCGTAGCAGCGGTGCAATTCAAGGAATTCAGTTTTGGCAAGATCAACAACCCCACCATTACTTGAAAAACCACAACGTAAATACTTGTCATGAAAATTATGTTCAGAGCAGTGACAGCGGCGACCGCAGTGGTGGTGGAATATCTGTCTCGGGTACTAATAGTGGCGGAACAACGACTACGTGTCAAGATTGTGGGAACCAGGCAAAGAAAGATTGTCCTAACAGAAAGTGTAGGACTTGTTGTAAGAGTAAAGGTTTTGATTGCCCTACTCACGTGAAGAGCACGTGGGTCTCAGCTGCACGACGGAGAGAACGCCAGCTTATGCAAACGGTCAACGGTGGTGGTTGTTCTACCGCTTCAACTTCGGGTGCTAAGAAACCTAAGCTTATTTCTTCACACACTACTTCCCATACTTCAACTTCTAATACCACTCCTCCTACAAGCTTTGACACCAGTTGTAGCTACCAAGATGCAAGTATCAACGAGCCATTGCCTGGTCAAATATGTGCACCTGCAGTGTTCAAGTGTGTTAAAGTGACGGCAGTGGAGGATGGAGAAGATGAGTATGCTTATCAAGCTGTTGTGAAGATTGGCGGCCATGTGTTTAAAGGGTTTCTCTATGATCAAGGGGCTGAAAATAGAAATGTTTATCCCAATCTCTCTGAGTTGCAATTGGGTGATGTTTATGGTGGAGGGCTACTCGGAGGTTCAGCCTATGGTTCACGCACCAAATTAGCTAAACATGGAAAGCAAAAGTATCCTGCTCCAGTGAAGTTTTTGAAGCATAGCATTGCTTGTGGTATGCTATTTACTTTTTAA 1296 0.4784 MMMMKGLIEKDSPSIPIVATTTRLPSDPGGGGGAFADWAATSSAANRSVASPSDDLSLGFNATGPTTGGIYSGATTRSINYNLGPPEMGMVGLRDLFVVTPASAFHHHHHEQTHFSDHHPHHHSINNSSNPATALGVGIIPLLAATPCIDNETMTSNRNRSSGAIQGIQFWQDQQPHHYLKNHNVNTCHENYVQSSDSGDRSGGGISVSGTNSGGTTTTCQDCGNQAKKDCPNRKCRTCCKSKGFDCPTHVKSTWVSAARRRERQLMQTVNGGGCSTASTSGAKKPKLISSHTTSHTSTSNTTPPTSFDTSCSYQDASINEPLPGQICAPAVFKCVKVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGAENRNVYPNLSELQLGDVYGGGLLGGSAYGSRTKLAKHGKQKYPAPVKFLKHSIACGMLFTF 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0127 431 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 88 390 - -
Lal6g0127 431 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 323 369 IPR006511 -
Lal6g0127 431 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 88 390 IPR007818 GO:0003700|GO:0006355
Lal6g0127 431 MobiDBLite consensus disorder prediction 270 307 - -
Lal6g0127 431 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 219 261 IPR006510 -
Lal6g0127 431 Pfam Domain of unknown function (DUF702) 217 371 - -
Lal6g0127 431 MobiDBLite consensus disorder prediction 194 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0127 Lal-Chr6 850239 853869 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0127 21 385 C2H2 Transcription Factor Family AT5G12330 47.194 2.74e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lal6g0127 DUF702 5.9e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0127 - - lang:109357487 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0127 6 850239 853869 Lal6g0127 6 850239 853869 ECH