Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0122 ATGATGGCTTTCTTTAGGAACTTTCAAAATGATACAGTCTCACATAGTGTCATGGAAGATAAAGTCAACGGACAGAATGCTAATAGAGTACATAGATTGGTAGGTAATGAATGTGCTGATGCAACTTCTAGTGAGAAGGAATTTGATATGAACACGGAGGCACAATATCAGAGTGATGGCGAACCAGATGGTGCCAGTAGACTTCAAAATGAGGAGGCAACAAATGATGATGGAGCGGCTACTAGAAAATCAAACTTACAGACGGCTTCTAGTAAAACTATTATGGTCGGGAGGTGGGGTTCGACATTTTGGAAGGACTGCCAACCTATGCGTCCACAAAATGGTTCTGAATCTGGGCATGAATCAAAAGGTGGACCGGTCAATAGAAATGAAGATGGATATGAAGGTAATTTATTGGATGGAAAAGGGGAAAGATCAGACTCAGAAGATGATGAACAAAAGGAAGAAGGAAAAGGTCCAGTAGGCCATCATGATGTTCCTGCTGAAGAAATGTTTTCTGATGAATATTATGAGCAGGGCGAGCCAGAGCAGCGTAACTCATTGCATCAGGGGGGGCTTCATAAGTTCACTGGATCGAATTTGTGGCCTCAACAAGTGTCCACTATTGCCAATAGAAATTCAAACAAGAAATCTAGGATTTCAAATGATGTCGAAGATGATGATGATGATGATGATGGTGATAAGGACGATGCTGACAGTGATGCTGATTATGAGGAGGAGGATGAAGCAGATGACGATGATCCTGATGATGCAGATTTTGAGCCTGCCACAAGTGTTCATGCAACAAACAAGGATAAAGATTGGGAAGGTGAAGGCTCATATGAAGATGATGATAGTGATGAAAATGTAGATGCCTCAGATGAAGACAACTCTTTCTATGGTAAAAAACCTAAGGGAAGACAACAAGCTAAAGTTGGACAAAGCCTAAAATCTGCTAGAGATCGTAAAACTTATCTGGCATCTGGTCGACAGAGAAGAGTTAAATCAACTTTTGAAAACAATGAGTCAATAGCAGATGATTCTGACAGTGGTAGTGACGAGGATTTCAAAAGCATTAAAAAGAGAGGTGTTCATGTCCGCAGGAATAATGGCTTCTCTTCTTCATCCACAAGTTTCTCTATGCGCAACAATGAGGTTCGCACTTCTACTAGGACAGTTAGGAAGGTATCATATGTTGAAAGTGATGAAAGCGAAGAGGCTGATGAAGGGAAGAAGAAAAAGTCCCAAAAGGAAGAAATTGAAGAGGACGATACTGACTCCATTGAAAAGGTGCTTTGGCATCAGCCGAAGGGCATGGCTGAAGATGCTCAAAGGAATAATAGATCAACATCCCCCATTTTAATGAGTCACTTGTTTGATTCTGAGGTTGATTGGAATGAGATGGAATTCTTGATAAAATGGAAAGGCCAGTCACATTTGCACTGTCAGTGGAAGTCTTTTGCTGACCTACAAAACCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAGATAATGGAGGACATTAAGCACAGAAAGAGTATCTCAAGAGAGGAGATTGAGGTCAATGATGTCAGTAAGGAGATGGATTTAGATATTATCAAACAAAACAGTCAGGTTGAAAGAATTATTGCAGATAGAATCAGCAAGGATAATTCTGGAATGGTTGTTCCAGAATACCTGGTCAAGTGGCAAGGGCTATCTTATGCTGAAGCAACTTGGGAAAAGGACATTGATATCACTTTTGCACAGCATGTTATTGATGAGTATAAGACTCGTGAGGCTGCAACGTCGGTGGTTCAAGGAAAGTTGGTAGATTCCCAGCGTAAGAAGAGCAAAGGTTGGTATCTGTTAAACTATGTAAGCTCCTTGTATGGCAATGCTATTCCGAGTTTTGCTACTTGCGCTATATCACTGTATAGCTCTGTTTCACCCTTGTTTGAAGACCTGAAAATAATCTCTGCGAGGGACTTCTTTATCTCAGTTTACTTGATTCTAACAAGTTTGCGGAAACTTGAGGAACAACCCGAATGGTTGAAAGGTGGAAAGCTCCGTGATTATCAACTAGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGGAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTCCAGTCGGTATCAATGCTAGGTTTTCTACAGAATGCCCAGAAAATCCATGGTCCTTTTCTTGTAGTTGTTCCACTGTCTACTTTATCAAACTGGGCCAAAGAATTCCGCAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGTACTCGTGCAAGTCGAGAGGTTTGTCAACAGTACGAGTTTTATGATGATAAAAAGGCTGGCAGACCAATAAAATTTAATGCACTGTTGACTACATACGAAGTAGTTTTGAAGGATAAGGCTGTTCTCTCCAAGATCAAATGGTGTTATCTTATGGTAGATGAAGCTCATAGACTTAAAAATAGTGAGGCGCAGTTGTACACAACACTTTCAGAATTTAGCACCAAGAATAAGTTGCTTATCACTGGTACTCCTCTACAGAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATGCTGATAAGTTCAAGAGCAAGGATGATTTTGTTCAAAATTATAAAAATCTGAGTTCTTTCAATGAGAATGAGCTTGCAAATCTTCATATGGAATTAAGACCTCATATACTTCGAAGAGTTATCAAAGACGTGGAGAAATCATTACCCCCAAAAATTGAGCGCATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTACTATAAGTGGATTTTGGAACGCAACTTTCATGATTTGAACAAAGGAGTTCGTGGTAACCAGGTTTCTCTTCTCAATATTGTGGTGGAACTGAAGAAGTGCTGCAACCATCCCTTTTTGTTTGAAAGTGCCGACCATGGCTATGGTGGAGACTCTGTTGATAACAGTAAACTAGAGAGAATTGTCTTTAGCAGTGGCAAGCTGGTCATACTTGATAAGCTACTTGTTAGGTTGCATGAAACCAAGCATCGTGTTCTAATTTTCTCCCAGATGGTTAGGATGCTGGATATACTGGCAGAGTATATGTCACTTCGTGGATTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTCCGACATCAGGCAATGGAGCATTTCAATGCCCCAGGTAGTGATGATTTTTGCTTCCTTCTCTCAACGCGAGCAGGGGGTCTGGGCATCAACCTTGCCACGGCAGATACTGTAATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCCCATAGAATTGGGCAACAGGAGGTTGTCAACATATATAGGTTTGTAACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGTGCTAAGAAGAAGATGGTTCTCGACCACTTGGTGATTCAAAAACTTAATGCAGAGGGTAGATTGGAGAAGAAAGAGGCCAAAAAAGGAGGCAGTTATTTTGACAAAAATGAGTTGTCCGCAATTTTACGGTTTGGAGCTGAGGAACTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGATATAGACGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAAGAAGCTGAGGGAGAGGATGGACATGAGTTATTAAGTGCGTTTAAGGCAAGAGACAGGACTTTGAAATTTGTTGCCAATTTTCGTAATGATGAAGACGATGGAGGTTTTTGGAGTCGGATGATAAAGGCTGATGCTGTATTCCAAGCAGAGGAAGCTCTTGCTCCACGTTCTGCAAGGAATATTAAAAGTTATGCAGAAGCTAATGAGCATGAGAGAAGTAATAAAAGAAAAAAGAAGGAACCTGAACCTCCTGAGCGAGTTCAGAAACGCCGGAAAGCAGAGTATTCAGCTCCTGCAGTACCATTGATTGAGGGAGCATCTGTGCAAGTGAGAAATTGGTCATATGGGAATTTATCCAAAAGAGATGCACTTCGATTTTCTCGTGCGGTTATGAAATATGGAAACGAGGATCAAATCAACTTAATTGTTGCCGAGGTTGGTGGTGCTGTTGGAGCAGCTCCACCCGAAGCACAGACTGAAATCTTCAATGCTCTAATTGATGGCTGTACTGAAGCACTGGAACTTGGAAGTCTGGATCCCAAGGTTGGGGGGCCTTTGTTGGATTTTTTTGGTGTCCCAGTCAAGGCAAATGATTTACTTACCCGTGTCCAGGAACTTCAACTCCTGGCAAAGCGCATCAGTAGATATCAAGATCCTATTGCACAATTTCGTGTTTTATCACATCTCAAGCCTTCGAATTGGTCGAAAGGTTGTGGGTGGAATCAGATTGATGATGCAAGATTGCTTCTAGGAGTTCATTACCATGGATTTAGTAATTGGGAGAAGGTTAGATTAGATGAAAGGCTTGGTCTTACAAAAAAGATTGCCCCAGCAGAACTTCAACACCATGAAACTTTCCTGCCAAGAGCTCCAAATTTGAGGGACCGTGCTAATGCCCTTTTGGAGCAAGAACTTGCTGTTCTTGGTGGAAACCATGCTAATAGCAGAGTTGGCCGGAAGTCTTCTAAGAAAGAGAGAGAAAATATGATGAACAACTCACTGTTGCGTGGGCAGGAAAAGAAAAAACCAGGTTCTGCTAAAGTTAATGTCCAAATGAGAAAGGATAGACTTAAGAAAACCCAAAAAATTGAACCTATAGTAAAAGAGGAGGGTGAAATGTCTGACAATGATGAAGTATATGAGCAATTCAAGGAGGTAAAATGGATGGAGTGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACCTTGAAACGTCTTCACAGATTGCAGACAACAAGTGCCAATCTTCCCAAGGAAAAGGTGCTTCCAAAAATACGCAACTATTTACAACTTCTTGGTCGAAGGATAGATCAAATTGTGTTAGATCATGAAGTGGAACCCTACAAGCAAGATAGAATGACAGTGCGGCTCTGGAAGTATGTCTCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAGCAGGAGCAACAAGATGAGGCTGGGGTTGGCCCCTCTCATGCCAATGGTTCAGCATCTGTTCCATATAGCAGAAACGGAAACCCATTCCCTCGCCATATGGAGAGGCAAAGAGGATACCAAAATGTGCCTAACTACCAAATGTCAGAACCAGTTAATAATACCGGTAAATCTGAGGCTTGGAAACGGAGAAGAAGATCTGAAAGTGTTGATCAATTCCAGGGGCAGTCGCCACCTCAAAGAACCATGAGTAATGGAATCCGGATTTCTGATCCTAGTGCACAAGGCATTCTTGGGGCTGGACCATCTGACAAACGTTTTGTTAGTGAGAAACCTTATAGGACACAACCTGCTTCAGCTATTGTATATTCTCTGGAAACAATTTCAACCTTTGGGAATAAGATCTTTCAGATCCTTTTTGGTATCTGTGAAGGATCTGAGAAATATTTCTACACAGCGGGATTTGCAATCTGGAACGAGGTGACTAAAGCCGATGATCTGGTCCAAGATTAA 5601 0.411 MMAFFRNFQNDTVSHSVMEDKVNGQNANRVHRLVGNECADATSSEKEFDMNTEAQYQSDGEPDGASRLQNEEATNDDGAATRKSNLQTASSKTIMVGRWGSTFWKDCQPMRPQNGSESGHESKGGPVNRNEDGYEGNLLDGKGERSDSEDDEQKEEGKGPVGHHDVPAEEMFSDEYYEQGEPEQRNSLHQGGLHKFTGSNLWPQQVSTIANRNSNKKSRISNDVEDDDDDDDGDKDDADSDADYEEEDEADDDDPDDADFEPATSVHATNKDKDWEGEGSYEDDDSDENVDASDEDNSFYGKKPKGRQQAKVGQSLKSARDRKTYLASGRQRRVKSTFENNESIADDSDSGSDEDFKSIKKRGVHVRRNNGFSSSSTSFSMRNNEVRTSTRTVRKVSYVESDESEEADEGKKKKSQKEEIEEDDTDSIEKVLWHQPKGMAEDAQRNNRSTSPILMSHLFDSEVDWNEMEFLIKWKGQSHLHCQWKSFADLQNLSGFKKVLNYTKKIMEDIKHRKSISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGMVVPEYLVKWQGLSYAEATWEKDIDITFAQHVIDEYKTREAATSVVQGKLVDSQRKKSKGWYLLNYVSSLYGNAIPSFATCAISLYSSVSPLFEDLKIISARDFFISVYLILTSLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQKIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYDDKKAGRPIKFNALLTTYEVVLKDKAVLSKIKWCYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDADKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSVDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRHQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEAEGEDGHELLSAFKARDRTLKFVANFRNDEDDGGFWSRMIKADAVFQAEEALAPRSARNIKSYAEANEHERSNKRKKKEPEPPERVQKRRKAEYSAPAVPLIEGASVQVRNWSYGNLSKRDALRFSRAVMKYGNEDQINLIVAEVGGAVGAAPPEAQTEIFNALIDGCTEALELGSLDPKVGGPLLDFFGVPVKANDLLTRVQELQLLAKRISRYQDPIAQFRVLSHLKPSNWSKGCGWNQIDDARLLLGVHYHGFSNWEKVRLDERLGLTKKIAPAELQHHETFLPRAPNLRDRANALLEQELAVLGGNHANSRVGRKSSKKERENMMNNSLLRGQEKKKPGSAKVNVQMRKDRLKKTQKIEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLPKIRNYLQLLGRRIDQIVLDHEVEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQQDEAGVGPSHANGSASVPYSRNGNPFPRHMERQRGYQNVPNYQMSEPVNNTGKSEAWKRRRRSESVDQFQGQSPPQRTMSNGIRISDPSAQGILGAGPSDKRFVSEKPYRTQPASAIVYSLETISTFGNKIFQILFGICEGSEKYFYTAGFAIWNEVTKADDLVQD 1866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0122 1866 Pfam SNF2-related domain 704 973 IPR000330 GO:0005524|GO:0140658
Lal6g0122 1866 MobiDBLite consensus disorder prediction 53 92 - -
Lal6g0122 1866 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 115 1743 - -
Lal6g0122 1866 SMART chromo_7 425 507 IPR000953 -
Lal6g0122 1866 SMART chromo_7 537 596 IPR000953 -
Lal6g0122 1866 MobiDBLite consensus disorder prediction 368 395 - -
Lal6g0122 1866 Pfam Domain of unknown function (DUF4208) 1603 1695 IPR025260 -
Lal6g0122 1866 Gene3D - 412 538 - -
Lal6g0122 1866 SMART helicmild6 1029 1113 IPR001650 -
Lal6g0122 1866 MobiDBLite consensus disorder prediction 183 217 - -
Lal6g0122 1866 MobiDBLite consensus disorder prediction 1280 1310 - -
Lal6g0122 1866 SUPERFAMILY Chromo domain-like 518 594 IPR016197 -
Lal6g0122 1866 SMART DUF4208_2 1591 1696 IPR025260 -
Lal6g0122 1866 MobiDBLite consensus disorder prediction 104 428 - -
Lal6g0122 1866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 670 906 IPR027417 -
Lal6g0122 1866 SUPERFAMILY Chromo domain-like 422 506 IPR016197 -
Lal6g0122 1866 ProSiteProfiles Chromo and chromo shadow domain profile. 426 514 IPR000953 -
Lal6g0122 1866 MobiDBLite consensus disorder prediction 278 294 - -
Lal6g0122 1866 Coils Coil 1197 1217 - -
Lal6g0122 1866 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 697 869 IPR014001 -
Lal6g0122 1866 MobiDBLite consensus disorder prediction 1275 1310 - -
Lal6g0122 1866 SMART ultradead3 681 880 IPR014001 -
Lal6g0122 1866 MobiDBLite consensus disorder prediction 1741 1805 - -
Lal6g0122 1866 ProSiteProfiles Chromo and chromo shadow domain profile. 539 603 IPR000953 -
Lal6g0122 1866 Pfam Chromo (CHRromatin Organisation MOdifier) domain 540 594 IPR023780 -
Lal6g0122 1866 CDD CD2_tandem 537 592 - -
Lal6g0122 1866 MobiDBLite consensus disorder prediction 1767 1787 - -
Lal6g0122 1866 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1003 1154 IPR001650 -
Lal6g0122 1866 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 115 1743 - -
Lal6g0122 1866 MobiDBLite consensus disorder prediction 396 428 - -
Lal6g0122 1866 Coils Coil 1143 1163 - -
Lal6g0122 1866 CDD SF2_C_SNF 989 1124 - -
Lal6g0122 1866 MobiDBLite consensus disorder prediction 224 259 - -
Lal6g0122 1866 Gene3D - 676 915 IPR038718 -
Lal6g0122 1866 MobiDBLite consensus disorder prediction 1699 1718 - -
Lal6g0122 1866 MobiDBLite consensus disorder prediction 107 123 - -
Lal6g0122 1866 MobiDBLite consensus disorder prediction 135 171 - -
Lal6g0122 1866 Gene3D - 916 1144 IPR027417 -
Lal6g0122 1866 Pfam Helicase conserved C-terminal domain 1000 1113 IPR001650 -
Lal6g0122 1866 Gene3D - 541 593 - -
Lal6g0122 1866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 909 1189 IPR027417 -
Lal6g0122 1866 CDD CD1_tandem 426 504 - -
Lal6g0122 1866 Gene3D - 1420 1529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0122 Lal-Chr6 755786 774308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0122 707 1140 RAD5 or RAD16-like Gene Family AT1G02670 25.941 1.22e-33 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal6g0122 SNF2_N 1.2e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0122 K11367 - gmx:100792398 2837.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0122 6 755786 774308 Lal6g0122 6 755786 774308 ECH
Lal18g1508 18 16939257 16957359 Lal6g0122 6 755786 774308 LSH