LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal6g0102	ATGGACAAACATTCTGGAGATTCTATGCCAGCTCATGGTGCTAAAGGTTCCCCTGAGATTTTATCACTTAATGTTGCCAAAAAAGTTGGAAGCAGCGCATGGGGAATACCAAGTGGGGCTGATGCATTTCATGCTTCAAGTAACGTTAGCTTATTTTCTAGTTCGCTTCCGATTCTTCCACATGAAAAAGGGATTTTTACTGATCATGAGCATTTTGGTCAATCTGCCAATGATAAGTCCCCAATAGTAGACAAAGTTCACAAAGAGGATGAAGGACAAGATCCACTTGAAGACATTACAGCCAATTTAATGGGAAAGATGCTTCCTGATGATGAAGATGACCTATTAGCTGGGATAATGGATGATTTTGACCTAAGTAGGTTGCCCAATCAGCTGGAGGATCTGGATGAAAATGATATTTTTGGCAGTGGAGGCGGGCTGGAAATGGATTTTGAACCCCAAGAGGGCGTAAGTATTGGTATTTCAAAGATAAGCTTATCTGATGGAGTCCCTTCAAATGGTTTCGGTCACTTTGCAATCCCCAATTGCATAGGAGCTGTGGCTGGGGAGCATCCTTATGGAGAGCATCCTTATGGAGAGCATCCATCAAGGACATTATTTGTGAGGAACATCAACAGTAATGTGGAGGACTCTGAATTAAGATCACTATTTGAGCAATATGGAGATATCAGAACATTGTACACTGCTTGCAAGCATAGAGGCTTTGTGATGATATCTTACTATGATATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAGCTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCAGAAAAGGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTGGATCCATCAGTATCAAATGACGACCTTCGTCAAATATTTGGAGCATATGGGGAGGTCAAAGAGATCAGAGAAACGCCTCATAAGAGGCACCATAAGTTTATTGAATTTTATGATGTTAGAGCAGCAGAAATTGCTCTTAAAGCATTAAATCGAATTGACATTGCTGGGAAACGCATCAAACTTGAACCCAGCCGCCCTGGTGGAGCACGACGAAACTTGATGCAACAAATGTCTGAGCTTGAGCAAGATGAAAGTCGAACTTTTAGACACCAAGTGGGTTCACCTATTGCCAATTCTCCTCCTGGTAACTGGGCACACTTTGGGAGTCCAGTTGAACATAATCCATTAGGTTCTTTCAGCAAATCTCCCGGTTTGAGTTATGGCAGCTCTATGAATACCAGTCATTTGCCCGGATTAGGAGCGATTCTTTCTCCACATTTGTCATCCTCTCCAAAGATTGCACCAATTGGCAAGGACCTTGGAAGGGCTAATAATGCAAATCAGGCATTTGCAAGCTCTGGATCTTCACAAGGTGCGGCTTTTCAGCACTCCATGCCCTTTCCTGAGCATAAAATTAGCCCTATGACTATATCTACATTTGGTGAATCAAAGTCAAGTTCTTCAAGTATTGGAACATTGTCTGGTCCTCAATTTCTGTGGGGAAGTCCAATTCCTAACTCGGAGCATTCAAACACATCTGCATGGTCTTCAACTTCTGGGAGTCTTCCATTTACTTCCAGTGGACAAAGGCAGGGTTTCCCATATACTAGTCGACTCAATTCGTTTCTTGATTCTCATCCGCATCCGCATCATCATGTGGGATCTGCTCCATCCGGCCTTCCTTTTGATAGGAATTTTAGCTACTATCCAGAGTCACCTGAAACTTCTGTCAAGAGTTCAGTTGCATATGGAAGCTTGAATCACGGTGATGGGAATTTTTTTATGAACATGGGTGCTCGTGCATCTGTAGGACTTGGGGTTGGTTTTTCAGAAAACACGACTGGAATTAGTTCACTTAATTTCAGAATGATGTCACAGCCTAGGCATGGTTCATTGTTCGTAGGAAATGGTTTGTATTCCGGACCAGGAGCAACAAACACCGAGGGATTGGCTGAACGAGGCCGAAATAAACGACCTGACAATAATGGAAACCAAATTGATAGCAAGAAGCAGTACCAGCTTGATCTGGACAAAATTATGAAGGGAGAAGACACAAGGACTACATTAATGATTAAAAACATTCCTAATAAGTACACTTCAAATCTGCTGCTTGCTGCTATTGATGAGAATCACAAGGGTAGTTATGACTTCCTCTATTTGCCAATTGACTTTAAGAACAAGTGCAACGTGGGTTATGCTTTCATCAACATGGTGTCTCCTTCATACATCATCCCCTTCTATAAGGCATTTAATGGGAAGAAGTGGGAGAAGTTCAACAGCGAAAAAGTTGCTTCACTGGCATATGCACGTATCCAGGGGAAGGGTGCCCTTGTGACACATTTTCAGAATTCAAGCCTAATGAACGAGGATAAGCGGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGAGATTGGTGACCAGGAACATTTCCTCTCAAGCAATTTGAATATATGCATTCGCCAACCGGATGGTTCTTACTCAGATGATTTGTTGGAGAGCCCGAAGGGCTTTTCCAATGAAAAGCTATGTTAG	2583	0.4243	MDKHSGDSMPAHGAKGSPEILSLNVAKKVGSSAWGIPSGADAFHASSNVSLFSSSLPILPHEKGIFTDHEHFGQSANDKSPIVDKVHKEDEGQDPLEDITANLMGKMLPDDEDDLLAGIMDDFDLSRLPNQLEDLDENDIFGSGGGLEMDFEPQEGVSIGISKISLSDGVPSNGFGHFAIPNCIGAVAGEHPYGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEIALKALNRIDIAGKRIKLEPSRPGGARRNLMQQMSELEQDESRTFRHQVGSPIANSPPGNWAHFGSPVEHNPLGSFSKSPGLSYGSSMNTSHLPGLGAILSPHLSSSPKIAPIGKDLGRANNANQAFASSGSSQGAAFQHSMPFPEHKISPMTISTFGESKSSSSSIGTLSGPQFLWGSPIPNSEHSNTSAWSSTSGSLPFTSSGQRQGFPYTSRLNSFLDSHPHPHHHVGSAPSGLPFDRNFSYYPESPETSVKSSVAYGSLNHGDGNFFMNMGARASVGLGVGFSENTTGISSLNFRMMSQPRHGSLFVGNGLYSGPGATNTEGLAERGRNKRPDNNGNQIDSKKQYQLDLDKIMKGEDTRTTLMIKNIPNKYTSNLLLAAIDENHKGSYDFLYLPIDFKNKCNVGYAFINMVSPSYIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKGALVTHFQNSSLMNEDKRCRPILFHSEGQEIGDQEHFLSSNLNICIRQPDGSYSDDLLESPKGFSNEKLC	860

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal6g0102	860	Gene3D	-	194	287	IPR012677	-
	Lal6g0102	860	PANTHER	PROTEIN MEI2-LIKE 2	12	853	-	-
	Lal6g0102	860	SUPERFAMILY	RNA-binding domain, RBD	704	788	IPR035979	GO:0003676
	Lal6g0102	860	SMART	rrm1_1	704	780	IPR000504	GO:0003723
	Lal6g0102	860	SMART	rrm1_1	205	273	IPR000504	GO:0003723
	Lal6g0102	860	SMART	rrm1_1	290	358	IPR000504	GO:0003723
	Lal6g0102	860	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	204	277	IPR000504	GO:0003723
	Lal6g0102	860	Gene3D	-	288	386	IPR012677	-
	Lal6g0102	860	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	12	853	-	-
	Lal6g0102	860	MobiDBLite	consensus disorder prediction	660	684	-	-
	Lal6g0102	860	CDD	RRM3_MEI2_like	705	790	IPR034454	-
	Lal6g0102	860	MobiDBLite	consensus disorder prediction	525	546	-	-
	Lal6g0102	860	CDD	RRM1_MEI2_like	203	279	IPR034453	-
	Lal6g0102	860	SUPERFAMILY	RNA-binding domain, RBD	201	364	IPR035979	GO:0003676
	Lal6g0102	860	Pfam	RNA recognition motif 2	702	798	IPR007201	-
	Lal6g0102	860	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	289	362	IPR000504	GO:0003723
	Lal6g0102	860	CDD	RRM2_MEI2_like	288	358	-	-
	Lal6g0102	860	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	291	356	IPR000504	GO:0003723
	Lal6g0102	860	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	206	270	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal6g0102	Lal-Chr6	640389	646979	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal6g0102	139	396	Eukaryotic Initiation Factors Gene Family	AT1G71770	24.028	6.64e-07	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal6g0102	-		-	gmx:100812324	1329.69