Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0097 CTGCTAATACCAGCCATGGAGCTTGATCCAAGTAATATTGAAGGAGGAGGAACAGAAGGGTGTTCTTCTCATCAGAAGAAAACAGGAAGAGGGAAAATAGAAATCAAGAGGATTGAAAACACAACAAATAGGCAAGTTACTTTCTGCAAACGCCGAAATGGGTTGCTGAAGAAAGCATATGAACTATCAGTGTTATGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCTAACCGTGGCCGCCTCTATGAATATGCCAACAACAGTGTTAGAGGAACTATCGAAAGGTACAAAAAAGCATCTGCTACTTCCACAAATGCAGAATCTGTATCTGAAGCTAATACACAGTTTTATCAGCAAGAGTCATCCAAATTAAAGAGACAGATCCGAGACATTCAGAATCTGAACAGGCACATTCTTGGTGAATCACTTAGCTCTCTGAGTCTCAAGGAACTAAAGAACCTTGAGAGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGACGTCGAGTTCATGCAAAAGCGGGAAGTTGAGCTGCAAAACCATAATAACTATCTGAGAGCTAAGATAGCTGAATATGAGAGAGCACAACAACAGCAACCAAATATGATGCAGCAGGGAAATGTGTGCGAGACCATAGCATCACAACAATATGATAGGAACTTCTTCCCAGTAAATCTCCTAGATCCCAATCATCAATATTCACGTCAAGACCACACTGCTCTCCAACTTGTGTAA 762 0.4068 MLIPAMELDPSNIEGGGTEGCSSHQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVRGTIERYKKASATSTNAESVSEANTQFYQQESSKLKRQIRDIQNLNRHILGESLSSLSLKELKNLESRLEKGLSRVRSRKHETLFADVEFMQKREVELQNHNNYLRAKIAEYERAQQQQPNMMQQGNVCETIASQQYDRNFFPVNLLDPNHQYSRQDHTALQLV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0097 253 ProSiteProfiles K-box domain profile. 114 204 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal6g0097 253 SUPERFAMILY SRF-like 29 106 IPR036879 GO:0003677|GO:0046983
Lal6g0097 253 Gene3D - 40 141 IPR036879 GO:0003677|GO:0046983
Lal6g0097 253 CDD MADS_MEF2_like 29 103 IPR033896 GO:0000977|GO:0045944
Lal6g0097 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 20 245 - -
Lal6g0097 253 Coils Coil 187 207 - -
Lal6g0097 253 ProSiteProfiles MADS-box domain profile. 28 88 IPR002100 GO:0003677|GO:0046983
Lal6g0097 253 Pfam K-box region 112 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal6g0097 253 ProSitePatterns MADS-box domain signature. 30 84 IPR002100 GO:0003677|GO:0046983
Lal6g0097 253 Coils Coil 148 168 - -
Lal6g0097 253 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 20 245 - -
Lal6g0097 253 SMART madsneu2 28 87 IPR002100 GO:0003677|GO:0046983
Lal6g0097 253 MobiDBLite consensus disorder prediction 8 31 - -
Lal6g0097 253 Coils Coil 117 137 - -
Lal6g0097 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 37 84 IPR002100 GO:0003677|GO:0046983
Lal6g0097 253 PRINTS MADS domain signature 30 50 IPR002100 GO:0003677|GO:0046983
Lal6g0097 253 PRINTS MADS domain signature 50 65 IPR002100 GO:0003677|GO:0046983
Lal6g0097 253 PRINTS MADS domain signature 65 86 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0097 Lal-Chr6 585993 591160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0097 13 253 MADS-box Gene Family AT2G42830 69.355 1.80e-120 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal6g0097 K-box 3.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0097 K09264 - gmx:100792224 384.415