Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0077 ATGCCTATTACCAACACTTTTCAAAGTATGACCAAGTGGTTTTCTGGAATAGTAGAAGTAGTATCAAGGTGTAAGGAATATTTTTATTCACCAGTTTTGGCTAGCATTTGTGGTTATGCAGTTGGATCATTCATGGTAGTTTTGAAGAAAGTTCTTCTTGCTGCATTTACTTGCAGTATGGCACTTGGAGGGTCAATAATAGGATTAATTGCAGGAAGCATCAGAGGTCGAAGCAGAGAAAATGGTTTTCTCGATTGTGCTGGCAAGGGTGCATTGTTAGGAGCCATTGCAGCCATAGAATTGGTTACTTATGCTGTTAATGGTGAGCCATTACCAGAAGAGGTTCCCACGTTAAGCAGTTTTTTTAATCCCGACGTGATTATAGAATGGATGTGTTCAGCTGCTTCACGTGCCTATGATATGCATTTTCAGATGAACATATCATCAGAAACAATTTACGGAGAAGTTTCAGATATTAATGGTATTGGAGGTGTTAAAGGGATGCCCCAAAGTTGTATTCAGAATCTTCCTTTTCAGGAATACAACTCAAACAAACTGTTCAAATTGTACAGTAAGATAAGCTGCTCAATTTGCTTACAGGATTTTGAGGATGGAGAACTGGTGAGGATACTTCCAAAATGCGGCCACCTTTTTCATGTAGAATGCATAGACAAATGGCTAATCCGACAAGGATCATGTCCAATGTGTAGAACTTATGTTCCTAATGATGATCACAATATTGAATACTAG 750 0.3853 MPITNTFQSMTKWFSGIVEVVSRCKEYFYSPVLASICGYAVGSFMVVLKKVLLAAFTCSMALGGSIIGLIAGSIRGRSRENGFLDCAGKGALLGAIAAIELVTYAVNGEPLPEEVPTLSSFFNPDVIIEWMCSAASRAYDMHFQMNISSETIYGEVSDINGIGGVKGMPQSCIQNLPFQEYNSNKLFKLYSKISCSICLQDFEDGELVRILPKCGHLFHVECIDKWLIRQGSCPMCRTYVPNDDHNIEY 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0077 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 243 IPR013083 -
Lal6g0077 249 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 18 240 IPR044523 -
Lal6g0077 249 SUPERFAMILY RING/U-box 188 243 - -
Lal6g0077 249 Pfam Ring finger domain 194 237 IPR001841 -
Lal6g0077 249 CDD RING-H2_PA-TM-RING 195 237 - -
Lal6g0077 249 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 240 - -
Lal6g0077 249 ProSiteProfiles Zinc finger RING-type profile. 195 237 IPR001841 -
Lal6g0077 249 SMART ring_2 195 236 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0077 Lal-Chr6 460619 462360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0077 18 240 C3H Transcription Factor Family AT5G66070 29.870 1.98e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0077 - K19041 gmx:100305612 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0077 6 460619 462360 Lal6g0077 6 460619 462360 ECH