Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0076 ATGGGAGGTTGTATGAGCCAAAGAGGATCAGAGAAAGAACACAGTAATGGTTACAGACATAATACACATGCTGGGGCCTACAATCACAACATCAAAAACAAATCCCATGAACCTTGGAAGCCCATTGTTCCAGCTCCAAGCCCAAAATATGTTCATAACACAGTCACAAACACAATCCTTGGAAAACAATTGGAGGATGTTAAACAGTTGTACACATTTGGTAAAGAATTAGGGAGAGGGCAATTTGGTGTAACTTATCTTTGCACTGAGAATTCAAGTGGTTTGCAATATGCATGCAAGTCCATTTCAAAGAAGAAACTTGTTACCAAATCTGATAAGGAGGATATAAAGAGGGAGATTCAGATTATGCAGCATATGAGTGGACAACCAAACATTGTAGAGTTCAAAGGTGCTTATGAGGATAGGAATTCAGTTCATGTTGTTATGGAGCTATGTGCAGGTGGTGAGCTTTTTGATAGGATCATTGCCAAGGGGCATTATAGTGAAAGAGCTGCAGCTTCAATATGCAGACAGATTGTTAATGTTGTTCATATATGCAATTTTATGGGGGTCATGCATAGGGATCTTAAGCCTGAGAATTTCTTGTTGTCCAGTAAGGATGAAAAGGCAATTCTCAAGGTAACAGATTTTGGCATGTCTGTCTTCATTGAAGAAGGAAAGGTGCATCTGGATATAGTTGGGAGTGCTTATTATGTTGCTCCAGAAGTTCTAAATCGTAGATATGGGAAGGAAATAGATATGTGGAGTGCAGGAGTTATATTGTATATCTTACTTAGTGGTGTCCCTCCATTTTGGGCAGAGACGGAAAGGGGTATATTTGATGCTATATTGCAAGGTCATATTGATTTTGAAAGTCAACCATGGCCAAACATATCAAACAGTGCTAAGGACCTTGTTAGTAAGATGCTTACACAGGACCCAAAGAAGCGTATTACTTCTACTCGTGTTCTAGAGCACCCATGGATAAGAGAAGATGGAAATGCTCCTGACAAGGCAATAGATAGTGCAGTCCTTTCTAGAATGAAGCAATTCAGAGCAATGAACAAACTTAAGAAACTTGCCCTCAAGGTCATTGCTGAGAATCTTTCTGAAGAAGAGATCAAAGGTTTGAAGTCAATGTTTACAAATATGGACACAGACAATAGTGGTACAATCACCTATGAAGAATTGAGAGCAGGATTGCAAAGACTTGGCTCAAAGCTCACTGAAACTGAAGTGCAGCAGCTTATGGAGGCTGCTGATGTAGATGGAAATGGTACAATTGACTACATAGAATTTATCACAGCTACAATGCATAGACACAGGTTAGAAAGAGATGAGCATCTTCACAAGGCCTTCCAATATTTTGATAAAGATAATAGTGGGTTTATTACAAGAGATGAACTGGAAACGGCCATGAAAGAATATGGAATGGGTGATAAAGCCACAATAAAGGAAATTATATCTGAAGTTGATGCAGATAATGATGGTAGAATAAACTATGAAGAATTTCGTACAATGATGAGAAGTGGAACCCAACAACAAGCCAAACTATTTTAA 1560 0.3872 MGGCMSQRGSEKEHSNGYRHNTHAGAYNHNIKNKSHEPWKPIVPAPSPKYVHNTVTNTILGKQLEDVKQLYTFGKELGRGQFGVTYLCTENSSGLQYACKSISKKKLVTKSDKEDIKREIQIMQHMSGQPNIVEFKGAYEDRNSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICNFMGVMHRDLKPENFLLSSKDEKAILKVTDFGMSVFIEEGKVHLDIVGSAYYVAPEVLNRRYGKEIDMWSAGVILYILLSGVPPFWAETERGIFDAILQGHIDFESQPWPNISNSAKDLVSKMLTQDPKKRITSTRVLEHPWIREDGNAPDKAIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKSMFTNMDTDNSGTITYEELRAGLQRLGSKLTETEVQQLMEAADVDGNGTIDYIEFITATMHRHRLERDEHLHKAFQYFDKDNSGFITRDELETAMKEYGMGDKATIKEIISEVDADNDGRINYEEFRTMMRSGTQQQAKLF 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0076 519 ProSitePatterns EF-hand calcium-binding domain. 421 433 IPR018247 -
Lal6g0076 519 CDD EFh 448 509 IPR002048 GO:0005509
Lal6g0076 519 CDD EFh 377 436 IPR002048 GO:0005509
Lal6g0076 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Lal6g0076 519 CDD STKc_CAMK 71 328 - -
Lal6g0076 519 ProSitePatterns EF-hand calcium-binding domain. 492 504 IPR018247 -
Lal6g0076 519 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 33 513 - -
Lal6g0076 519 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 513 - -
Lal6g0076 519 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Lal6g0076 519 SMART efh_1 376 404 IPR002048 GO:0005509
Lal6g0076 519 SMART efh_1 483 511 IPR002048 GO:0005509
Lal6g0076 519 SMART efh_1 448 476 IPR002048 GO:0005509
Lal6g0076 519 SMART efh_1 412 440 IPR002048 GO:0005509
Lal6g0076 519 Gene3D - 338 515 - -
Lal6g0076 519 ProSiteProfiles EF-hand calcium-binding domain profile. 408 443 IPR002048 GO:0005509
Lal6g0076 519 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Lal6g0076 519 Gene3D Phosphorylase Kinase; domain 1 73 156 - -
Lal6g0076 519 MobiDBLite consensus disorder prediction 1 38 - -
Lal6g0076 519 Gene3D Transferase(Phosphotransferase) domain 1 157 337 - -
Lal6g0076 519 ProSiteProfiles EF-hand calcium-binding domain profile. 372 407 IPR002048 GO:0005509
Lal6g0076 519 SUPERFAMILY EF-hand 368 508 IPR011992 -
Lal6g0076 519 ProSiteProfiles Protein kinase domain profile. 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0076 519 Pfam Protein kinase domain 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0076 519 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Lal6g0076 519 SUPERFAMILY Protein kinase-like (PK-like) 71 330 IPR011009 -
Lal6g0076 519 ProSiteProfiles EF-hand calcium-binding domain profile. 480 514 IPR002048 GO:0005509
Lal6g0076 519 SMART serkin_6 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0076 519 Pfam EF-hand domain pair 447 509 IPR002048 GO:0005509
Lal6g0076 519 Pfam EF-hand domain pair 377 437 IPR002048 GO:0005509
Lal6g0076 519 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0076 Lal-Chr6 445985 456316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0076 47 519 EF-hand Containing Proteins AT3G20410 79.579 0.0 804
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal6g0076 Pkinase 1.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0076 K13412 - gmx:100794852 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0076 6 445985 456316 Lal3g0906 3 9162713 9168500 ECH
Lal6g0076 6 445985 456316 Lal6g0076 6 445985 456316 ECH