Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0068 ATGGCTGCTACATGTAATGATGCCATTGCCGTGGGTGATGACTCTACTGCCTCACATTCTAATTCACTTGTCATGTCGTTTAGTAAGAAACGACTAGCCTTGCATGAGGTGGATTTCTTTGCTCAGAATAATAAGAAAAAGAGCCAACATGATCATGATCATGATCATGATGCTCAAACGGTGCACTGTATAGAGCTTAATGAAGATACTAGTTTGGATCTACAAATGAAGATAACGGGTCGCAACAGATCAATAAAGAAATATGGGGATGAAAGAAATGAGCTTGCTGCAATGCTAGCTGAATTGCACGATATGAATGCTGAAAATCATCGTTTGAGAGAGCTGGTTGATCAGGTCAACAATGACTACAATGCCCTACACATGCAACTTATCAAGTTGATGAAGACACAGCATAGCCATGGGGGTGACCAAGCCATAGAGAAGGGTAAGAAAGAAGGTATGATTGACTTGATGGAGAGCAACACTGTTCAAGCATTGGAACCAACTAAGGATAATAGCTCAAAAGCAAGAATAATAGAGGAGAAGCCAGGTGAGCAAGCATTCCAAGGGTGGCTCTCTAACAAAGTTCCTAGGCTGAATTCTTTTATGGATCATGTTGATCAAGCATCTGAAACCATGTCAATCATCAAGAAAGCTCGTGTATCAGTTCGAACAAGATCAGAATCTTCAATGATAGCAGATGGATGCCAATGGAGAAAGTATGGGCAGAAGATGGCGAAAGGGAATCCATGTCCGCGAGCTTATTATCGTTGCACCATGTGTACTGGTTGTCCAGTACAAAGGTGTGGTGAAGATAAAAGTGTGTTGATCAATACATATGAAGGGCAACATAACCATCCACTCCCTCCAACTGCAATGGCAATGGCATCAACAACGTCTGCAGCTGCATCAATGCTTCTTTCTGGATCAATGCCTAGTGCTGATGGTCTAATTAATCCAAGCATATTACAAAGTGCTGCATTTTCATCCTCACACAACAACATGGCTACTCTCTCTGCCTCAGCTCCATTTCCAACTATTACATTAGATCTCACTCAACAAAGTGCTACCAATTCCTCATCACAGCTACAAAAGGACCAACTTAGCCTCCTAGCTCCACTTTTGTCTGAAAAGTTTATGTCAGATCCATCACTTACTGACACTGTTAATGCAGCTACGGCTGCTATCACTGCAGACCCCAATTTCACCTCAGCTCTTGTTGCTGCTATAACATCTATCATTGGAACTTCACATCCAAACAACAATAATGGTAACTATAATACAAGTGGAGATCAGCAGTGCAATAACTCATAA 1314 0.4163 MAATCNDAIAVGDDSTASHSNSLVMSFSKKRLALHEVDFFAQNNKKKSQHDHDHDHDAQTVHCIELNEDTSLDLQMKITGRNRSIKKYGDERNELAAMLAELHDMNAENHRLRELVDQVNNDYNALHMQLIKLMKTQHSHGGDQAIEKGKKEGMIDLMESNTVQALEPTKDNSSKARIIEEKPGEQAFQGWLSNKVPRLNSFMDHVDQASETMSIIKKARVSVRTRSESSMIADGCQWRKYGQKMAKGNPCPRAYYRCTMCTGCPVQRCGEDKSVLINTYEGQHNHPLPPTAMAMASTTSAAASMLLSGSMPSADGLINPSILQSAAFSSSHNNMATLSASAPFPTITLDLTQQSATNSSSQLQKDQLSLLAPLLSEKFMSDPSLTDTVNAATAAITADPNFTSALVAAITSIIGTSHPNNNNGNYNTSGDQQCNNS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0068 437 SUPERFAMILY WRKY DNA-binding domain 224 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal6g0068 437 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 15 143 IPR044810 GO:0003700
Lal6g0068 437 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 164 423 IPR044810 GO:0003700
Lal6g0068 437 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 15 143 - -
Lal6g0068 437 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 164 423 - -
Lal6g0068 437 SMART WRKY_cls 232 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g0068 437 Gene3D WRKY domain 217 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal6g0068 437 MobiDBLite consensus disorder prediction 418 437 - -
Lal6g0068 437 Pfam WRKY DNA -binding domain 234 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g0068 437 Coils Coil 88 122 - -
Lal6g0068 437 ProSiteProfiles WRKY domain profile. 227 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0068 Lal-Chr6 405122 408042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0068 94 414 WRKY Transcription Factor Family AT4G04450 42.386 4.41e-83 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal6g0068 WRKY 8.1e-17 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0502 1 3222229 3227534 Lal6g0068 6 405122 408042 ECH
Lal6g0068 6 405122 408042 Lal5g1472 5 17177574 17180501 ECH
Lal6g0068 6 405122 408042 Lal11g0428 11 3203910 3207024 ECH
Lal6g0068 6 405122 408042 Lal6g0068 6 405122 408042 ECH
Lal18g1580 18 17391291 17394808 Lal6g0068 6 405122 408042 LSH
Lal18g1580 18 17391291 17394808 Lal6g0068 6 405122 408042 PCT
Lal6g0068 6 405122 408042 Lal18g1580 18 17391291 17394808 PCT