Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0066 ATGAGGAAAATATCGGTGGAGCCACGGTACCGTGGCGTGAGAAAGAGGCCGTGGGGAAGGTTTGCGGCGGAGATTAGAGACCCAATCAAGAAAGCAAGGGTATGGCTTGGAACATTCGATTCCGCCGAGGATGCGGCGCGTGCTTACGACGCGGCCGCTATATCCCTTCGTGGTCCCAAAGCAAAAACAAACTTCCCTCTTAATCCTTCTCCCTTTTACCATCACCAAGCCACCGATCCTCATTTCGACCACCACCGTTACTACGCCACCACCACTGCCAACAACGCTGGTGGTGGTTTTAATGAACATGTTGTTATTAACCCTAATAGACAAACATCTAGTGGTATGAGCAGCACCGTTGAGTCATTCAGCGGTCCTCGTCCTCCATACGCCGTGACTCTGCCGGTGGTGACAAGAAGATATCCTCGTACACCGCCGGTAGTGCCTGAAGACTGCCATAGTGACTGCGACTCGTCGTCGTCGGTGGTTGATGATGGAGACAACATTGCTTCGTCGTCATTTAAAGCGCCATTACCGTTTGATCTTAACGGGCCGCCGTTAGATGTTGATGCTGACATGGCTATCGGTGATGGTTACCTTCATTGTACCGCTCTATGCCTATGA 624 0.516 MRKISVEPRYRGVRKRPWGRFAAEIRDPIKKARVWLGTFDSAEDAARAYDAAAISLRGPKAKTNFPLNPSPFYHHQATDPHFDHHRYYATTTANNAGGGFNEHVVINPNRQTSSGMSSTVESFSGPRPPYAVTLPVVTRRYPRTPPVVPEDCHSDCDSSSSVVDDGDNIASSSFKAPLPFDLNGPPLDVDADMAIGDGYLHCTALCL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0066 207 SUPERFAMILY DNA-binding domain 9 67 IPR016177 GO:0003677
Lal6g0066 207 Pfam AP2 domain 8 58 IPR001471 GO:0003700|GO:0006355
Lal6g0066 207 Gene3D AP2/ERF domain 9 68 IPR036955 GO:0003700|GO:0006355
Lal6g0066 207 ProSiteProfiles AP2/ERF domain profile. 9 66 IPR001471 GO:0003700|GO:0006355
Lal6g0066 207 SMART rav1_2 9 72 IPR001471 GO:0003700|GO:0006355
Lal6g0066 207 PRINTS Ethylene responsive element binding protein signature 10 21 IPR001471 GO:0003700|GO:0006355
Lal6g0066 207 PRINTS Ethylene responsive element binding protein signature 32 48 IPR001471 GO:0003700|GO:0006355
Lal6g0066 207 CDD AP2 8 66 IPR001471 GO:0003700|GO:0006355
Lal6g0066 207 PANTHER ETHYLENE RESPONSE FACTOR 7 187 - -
Lal6g0066 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0066 Lal-Chr6 400589 401212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0066 7 207 AP2-EREBP Transcription Factor Family AT3G20310 57.642 1.93e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal6g0066 AP2 1.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0066 K09286 - gmx:100820249 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0066 6 400589 401212 Lal6g0066 6 400589 401212 ECH
Lal18g1584 18 17409696 17410349 Lal6g0066 6 400589 401212 LSH
Lal22g0065 22 393726 394337 Lal6g0066 6 400589 401212 LSH
Lal3g0857 3 8009899 8010579 Lal6g0066 6 400589 401212 PCT
Lal18g1584 18 17409696 17410349 Lal6g0066 6 400589 401212 PCT
Lal6g0066 6 400589 401212 Lal3g0857 3 8009899 8010579 PCT
Lal6g0066 6 400589 401212 Lal18g1584 18 17409696 17410349 PCT