Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0060 ATGGACGAAACGACGCCGCACCCCGATGTCCATGTAGAAAACTCCTCTTTGGACTCAAAGCGCGCCGAAGAAGATGAACGGTCCTTCAAGAAGCATAAGGTTGATTCTCCCTCCACCGACGAAGGGGAATTGAAGAGAGTGGCTGAAATTGTGTTGGTGTTATCTACCATGACGACGATGCGAGCCGGTAAGAAACCCACCGATGTCGAGGTTGAGCTCATGAAGGAGGCGCGTCAGAAACTAGCTGAGCTCTGTCAAGGTTTAGCACCCAAGGATGTTGTAGCCAGGGAAGCTATTGGGACCGTCATTGAAGATCTCGGATTGAATGGAAAGATTAAGGACCAGAGGTTAGGGTTTCGGACTCCTAAATTCTCAATTGCGGAGAGGTTTTCAATTGCTAAGCGGAAGTTGGATGAATCAAAGAAATTTTCTGCACCTTCCACAACTTACACAACTCAGCCCATGCAAACTAGCATCGGTGGAACAGTTGACAACCGTGTGCCGCCACCTCCTGTTCGGATATTTGCATCTGATAAATCAAGCCATACAGCAATCTCTTCTACTGGCACCGTAGTGTCTGTTCCTGCCCATGTTTCTGCAGCACCTTCTGCAGCGTTGCAATATCAATCGACCAACAATGAAGTAAGACCTCCTATGATTTCTGGTACAATGCCTAGTAGTCACTTGGGGAGAAATCCATCTCCCTTAGCAATGCCTAAAGTTGATGGAGGATCAAATGCGCCTTCTTATGTTCATCAAGTTCCAGCAAATTCGCCAGCAAACCAACCTTTGGTGAATGCTCCAACATGGTCGATACCAACTCAGTCTGCATCATTAGCTAGAAGTGCATCAGAAAACAAGGTGCCTGGTCATAACTCTGTCAAGGTTGAAGGACCAAGTAGTGTAGCTGCGTCAAGGACTGGGCCACATATAGCAGCAGATCAGAGCTTTAGACCATTTATTAATCAAACAACGCCTGGAAATTTGTCTAGCATGTCAAAGCCATTGCAGGGCGTGAACATAGTTCAGCCTCCTATGATTCCTAGTCACATTGACATTGCAAAGATTGTCCAGAAATTGCTGCAACCAAAGCTTCCTGAGCTTCCCACATGGAATCCCCCATCAAGGGATTATATAAGTAAGGCTTTGACATGCCAGATGTGTGATCTTGCTGTCAATGAGGTTGATACTGTACTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGCTTGCAGCCATCGGTCTTAAGAGGAATTCATAATAGAGTTGATTGGCACTGCATGAGGTGCTTGAGTTTAAGTGGTGGGAAAGCTTTGCCTCCAAAATATGGCCGTGTCATGAGATCTTCTAGCACACCACAAAAATTGCCCTCTAATGCGGGTGACATTCAACCGTCTTCAGAGAATAAAGTGGGGAGCTTAGATCCAAAGGCCAACCTTCAGAAGTTGCCCACAAATGTGAGCTCTGTTCCAGCTGTTACTGCTGGCAATGACAATGTTCAGCCACCATTTGAACCAAAGGCCCCAGACACAAAAGGTATACATATCACCAGCATTTCATCCAACATTAATCATATTGATGTAAAGCCTGCTGATCCAAACATGTCTACAAAATCCCAAAGTGCAGCTTCTGGTCCTTCTGTTTGTTTGCCAGGAGTAAGTTCTGTTCAACAAATATATTCTGACTTTGAAGCTTCAACCTGTAAACATACTTCAGAATCTGAGACTCTTCCCAAATTATCTGAGCCAGGTAATTGTGACAATTTACAATCATCACAAGATTTTCAAGTTGAACAGACATTGTCACAAGGCAAGGCTGAGGTATCATCAGATAAACTTGTCGACAATAGTTTAATGAATAAAACAATAAAGGAATCTCATGGAGGAGAAAATTTAAGTAACAATATGAAGAGTGGTGACCAAGACGTTGCACTAGCAAATTTTGATGGAAGTTCTGGAACTATTACTGAATGTAGACAGCAGTCTGCATTATCTTCAGATAACTCAGATGGTGTAGAATGGGTTGGTGATGCTGTACAACTTGTAGACGAGAAAAAGTTTTACCAGTCTTGCTGTATTGATGGAATAACATATAGGCTGCAGAGCTATGCTCTTTTCCCCTCCACCCATGGCAAATTAGCACCTTCTAAACTTCAGTCTATGTGGGAGGATTGCAAAACTGGGTTAAAGTGGGTTAAGGTGACAAAATGCTACTTTCCTGGTGACTTGCCTGGGAATATTGGTCATCCTTGTGTATCTGAAGTTAATGAGGTTTATGAATCAAATAGTGATGGAACTGAAATGGCAAGCTCTATTCGAGGCCTGTGTGAAGTCCTACCATCTGATAAATTTAAACAAGAAAGTGACAGGCGAAGTCAATTAGGAAATGAAACAAGTGCTAGATTTCAGCCAATTTTCTCATGCAGGTGGTTTTATGATGAAATCAAGAAGTTATTCCAACCTGTCACCAGTTGA 2481 0.4325 MDETTPHPDVHVENSSLDSKRAEEDERSFKKHKVDSPSTDEGELKRVAEIVLVLSTMTTMRAGKKPTDVEVELMKEARQKLAELCQGLAPKDVVAREAIGTVIEDLGLNGKIKDQRLGFRTPKFSIAERFSIAKRKLDESKKFSAPSTTYTTQPMQTSIGGTVDNRVPPPPVRIFASDKSSHTAISSTGTVVSVPAHVSAAPSAALQYQSTNNEVRPPMISGTMPSSHLGRNPSPLAMPKVDGGSNAPSYVHQVPANSPANQPLVNAPTWSIPTQSASLARSASENKVPGHNSVKVEGPSSVAASRTGPHIAADQSFRPFINQTTPGNLSSMSKPLQGVNIVQPPMIPSHIDIAKIVQKLLQPKLPELPTWNPPSRDYISKALTCQMCDLAVNEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKALPPKYGRVMRSSSTPQKLPSNAGDIQPSSENKVGSLDPKANLQKLPTNVSSVPAVTAGNDNVQPPFEPKAPDTKGIHITSISSNINHIDVKPADPNMSTKSQSAASGPSVCLPGVSSVQQIYSDFEASTCKHTSESETLPKLSEPGNCDNLQSSQDFQVEQTLSQGKAEVSSDKLVDNSLMNKTIKESHGGENLSNNMKSGDQDVALANFDGSSGTITECRQQSALSSDNSDGVEWVGDAVQLVDEKKFYQSCCIDGITYRLQSYALFPSTHGKLAPSKLQSMWEDCKTGLKWVKVTKCYFPGDLPGNIGHPCVSEVNEVYESNSDGTEMASSIRGLCEVLPSDKFKQESDRRSQLGNETSARFQPIFSCRWFYDEIKKLFQPVTS 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0060 826 Pfam PHD-finger 385 433 IPR019787 -
Lal6g0060 826 Gene3D - 667 826 IPR043151 -
Lal6g0060 826 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 18 825 - -
Lal6g0060 826 MobiDBLite consensus disorder prediction 1 42 - -
Lal6g0060 826 MobiDBLite consensus disorder prediction 144 163 - -
Lal6g0060 826 CDD BAH 697 825 - -
Lal6g0060 826 ProSiteProfiles BAH domain profile. 698 825 IPR001025 GO:0003682
Lal6g0060 826 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 18 825 - -
Lal6g0060 826 MobiDBLite consensus disorder prediction 144 168 - -
Lal6g0060 826 MobiDBLite consensus disorder prediction 448 478 - -
Lal6g0060 826 MobiDBLite consensus disorder prediction 449 478 - -
Lal6g0060 826 MobiDBLite consensus disorder prediction 286 306 - -
Lal6g0060 826 ProSitePatterns Zinc finger PHD-type signature. 385 432 IPR019786 -
Lal6g0060 826 ProSiteProfiles Zinc finger PHD-type profile. 382 435 IPR019787 -
Lal6g0060 826 SMART PHD_3 384 433 IPR001965 -
Lal6g0060 826 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 450 IPR013083 -
Lal6g0060 826 SUPERFAMILY FYVE/PHD zinc finger 376 438 IPR011011 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal6g0060 PHD 2.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0060 - - gmx:100807139 1132.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0060 6 361229 370259 Lal6g0060 6 361229 370259 ECH