Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0049 ATGGAATTGGATCTTGGCAAACTCTTCATTGGAGGGATTTCATGGGATACTGATGAGGAGCGTCTCAGAGAATATTTTGGGAAATATGGAGAAGTAATAGAGGCTGTGATCATGAGAGATCGTGCAACAGGTCGCGCTCGTGGTTTTGGTTTTGTTGTCTTTTCTGATCCTGCTGTTGCTGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAGGCTGTTCCTAGGGATGACCAGAATGCTATAAATAGACAGCCTGGTGGTGTCCTAGGATCTCCTGGTCCCGGACGCACGAAAAAGATTTTTGTCGGAGGTTTACCATCAACAATCACAGAAAACGATTTTAAGCAGTATTTCGATCAGTTTGGTATAATTACCGATGTTGTTGTAATGTATGATCATAATACTAGGAGGCCAAGAGGTTTTGGCTTCATCTCTTATGATTCAGAAGATGCTGTGGATAGAGTTCTTTGTAAAACATTTCACGAACTGAATGGAAAGATGGTCGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTCCCCTGGGCCGAACAGAAGCCCATCGATAGGATATAACTTTGGTTTGAATAGGGCAAGTATCTACCTAAATAGTTATGCTCAGGGTTTTAATATGAATCCAAGAGGAGACTATGGAATCAGAATGGATGGTAGGTTTAGTCCACTTTCTAGTGGTAGGAGTGCTTTTAATCAATTTGGTTCTGTTGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAGCCCAATGTATGGAGGGACATCCAATTATGGGAACAGTCTAGGATATGGTAGGATATTAAGTCCTATCTACAGTGACAACAACTCAGGCAGATACACCACTCCTATAGGCTATAATAGCAGTGGCAACATGAGGGGTGATTCTCTCGTGAACTCAACTTCTCGCAATTTATGGGGAAATGGAAGCCTGAATAATACTACCATTAGCCAAGTCAACCCTGGTGCTTACTTGGGATCTGGAAGTGAGACTTTCGGTGTTTCGATTGGAAACAGTGGTACAAATCGGAATCCATCAGTTCCAACTCAGGGTGGGGGCACTTTTGCTGCTTCAGGCTTTACTAATTGGAGTAATGCTTATGAAGGTGGAGGAGATAGTAACATAGGATTAGGAGAAGGAGGGTATGGAAGGAACAGCAGCACAAATGTGACTCAATCCTCTTCCTTTGCTGCACCAGCTGGTGGTTATGAAGGATTCTATGGGGACTTGTATCGCAGTGGTTCAGTTTACAGTGACACGACTTGGCGATCTGCTGCTTCTGAGATAGATGGTTCTAGCTCGTTTGGTTATGGACTTGGTGGTATAACATCAGATGATCCAGTAAAGACTTCCGAGGGTTTTATTGGAAACTACAATGTAACAAGTAGGCAACCTAATAGAGGTAAGATCTTTTTCTAA 1455 0.4268 MELDLGKLFIGGISWDTDEERLREYFGKYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIMDKHIIDGRTVEAKKAVPRDDQNAINRQPGGVLGSPGPGRTKKIFVGGLPSTITENDFKQYFDQFGIITDVVVMYDHNTRRPRGFGFISYDSEDAVDRVLCKTFHELNGKMVEVKRAVPKELSPGPNRSPSIGYNFGLNRASIYLNSYAQGFNMNPRGDYGIRMDGRFSPLSSGRSAFNQFGSVGYGMGVNLDSGLSPMYGGTSNYGNSLGYGRILSPIYSDNNSGRYTTPIGYNSSGNMRGDSLVNSTSRNLWGNGSLNNTTISQVNPGAYLGSGSETFGVSIGNSGTNRNPSVPTQGGGTFAASGFTNWSNAYEGGGDSNIGLGEGGYGRNSSTNVTQSSSFAAPAGGYEGFYGDLYRSGSVYSDTTWRSAASEIDGSSSFGYGLGGITSDDPVKTSEGFIGNYNVTSRQPNRGKIFF 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0049 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lal6g0049 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lal6g0049 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Lal6g0049 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Lal6g0049 484 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Lal6g0049 484 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 481 - -
Lal6g0049 484 Gene3D - 6 88 IPR012677 -
Lal6g0049 484 SUPERFAMILY RNA-binding domain, RBD 5 104 IPR035979 GO:0003676
Lal6g0049 484 SMART rrm1_1 107 179 IPR000504 GO:0003723
Lal6g0049 484 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lal6g0049 484 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 481 - -
Lal6g0049 484 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lal6g0049 484 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Lal6g0049 484 Gene3D - 103 189 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0049 Lal-Chr6 308575 311123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0049 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 23.596 4.60e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0049 K14411 - gmx:100788515 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0049 6 308575 311123 Lal6g0049 6 308575 311123 ECH
Lal18g1601 18 17497829 17501717 Lal6g0049 6 308575 311123 LSH
Lal22g0060 22 366212 369838 Lal6g0049 6 308575 311123 LSH
Lal11g0696 11 6615069 6622924 Lal6g0049 6 308575 311123 PCT
Lal6g0049 6 308575 311123 Lal11g0696 11 6615069 6622924 PCT