Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0048 ATGGACGCTTCTACCACTAACGAAACCCACTCAGCTTCACAACCAAATGATCCGAATCGTATCGGGTCGGGTCATAACAATTCAGGTAGGTACAGGCTTATGTCGCCGTCTAAACTTCCGATCTCCAGGTCACACTGCATCACCATACCTCCGCCACTCACTCCGACGTCGTTTTTAGACTCCCCTGTTCTTATTTCCAATATCAAGGTGGAGCCTTCACCTACTACAGGGTCCTTTTCTAAGCTTCTTCAAACAGTGCATAGTTCCATGTCTTCTTCTGCGTCTGCTACATTTCCTGTAACCACTACATGCTTCAATACCAATACTATTGAGGAAAGAGAATCAAACATCTTTGAGCTTAAACCACACAATATATCAAACATGGTTCCTGCAGACTTCAACAACCATGTAAGTGAACAATCTATTCAAGACGAAGGTCCAGGAAAAGTTCAATCATTTGCTTCCTCACCATTAGTTGAAAGTGAGACTGGTGGTCTATCTAATGAATTAAGCATATCATCACCTGTTCAAATGGTTAGTTCTGGGGCTATCACTCATGTTGAAGTCGATTCAGATGAATTGAACCACAAAGGCAACACAACCGCTGTACTTCAAGCATCACAAATTGAGGAGGTTAAAGGCAGTGGACTTTCAGTTGCACCTGAGAGAACATCTGATGATGGATACAACTGGCGAAAATATGGGCAGAAACTTGTTAAAGGAAGTGAATTTCCGCGCAGCTATTACAAATGTACACATCCTAACTGTGAAGTGAAGAAACTTTTTGAACGCTCTCATGATGGTCAAATGACGGATATAGTTTACAAAGGAACACATGATCATCCGAAACCTCAACCAAGCCGACGATACTCTGCTAGCAGTACTGTGTCCATGCAAGAAGAGAGATCTGGTAAGGCTTATTTGGCTGGCCAAGATGCTGAGACCAACATCACTCCAGACCTATCGCCTGTAGCAACAAATGATGATAGTCAAGAAGGTGCTGACAGGACTAATGACGAAGTTGATGATGATGATCCCTTCTCGAAGCGTAGAAAAATGGAACCTGGATTCGCTGACACAACTCCTGTAGTCAAGCCTATCCGGGAGCCACGGGTTGTTGTACAAACTGTGAGCGAGGTTGATATATTGGATGATGGGTACCGCTGGCGCAAGTATGGGCAAAAGGTGGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAGTGCACAAATGTTGGTTGTCCGGTTAGAAAACATGTGGAAAGAGCATCACATGATCCAAAAGCAGTGATAACCACATATGAGGGTAAACACAATCATGATGTACCAGCTGCAAGAAATAGTAGCCATGACATGGCAGGAGCAGCAGGTGTAGGTGGTGGAGAAGCAAGAATCAAGTTAGATGAAAGTGATACTATTAGCCTTGACCTTGGCATGGGAATAAGCTCAGCTGCTGAAAATAGATCAAATGGGCAAGGGAAAATGCTGCTCTCTGAATTTGGCAACATCCAAACTCAAACCAGAAATTCCAACTTCAACTTTGTTCATACTACCGCAGGTCCGGTATACGTTCTAAATAATGGTGCAAATCCATATGGTTCTATAGAAAATAGGAGTGATGATCCATCTTTAAACCACACCTCATCATATCCTTGCTAA 1659 0.4322 MDASTTNETHSASQPNDPNRIGSGHNNSGRYRLMSPSKLPISRSHCITIPPPLTPTSFLDSPVLISNIKVEPSPTTGSFSKLLQTVHSSMSSSASATFPVTTTCFNTNTIEERESNIFELKPHNISNMVPADFNNHVSEQSIQDEGPGKVQSFASSPLVESETGGLSNELSISSPVQMVSSGAITHVEVDSDELNHKGNTTAVLQASQIEEVKGSGLSVAPERTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQMTDIVYKGTHDHPKPQPSRRYSASSTVSMQEERSGKAYLAGQDAETNITPDLSPVATNDDSQEGADRTNDEVDDDDPFSKRRKMEPGFADTTPVVKPIREPRVVVQTVSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSHDMAGAAGVGGGEARIKLDESDTISLDLGMGISSAAENRSNGQGKMLLSEFGNIQTQTRNSNFNFVHTTAGPVYVLNNGANPYGSIENRSDDPSLNHTSSYPC 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0048 552 ProSiteProfiles WRKY domain profile. 220 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g0048 552 MobiDBLite consensus disorder prediction 342 356 - -
Lal6g0048 552 Gene3D WRKY domain 370 436 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal6g0048 552 SMART WRKY_cls 383 442 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g0048 552 SMART WRKY_cls 225 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g0048 552 Pfam WRKY DNA -binding domain 226 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g0048 552 Pfam WRKY DNA -binding domain 384 440 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g0048 552 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 26 530 - -
Lal6g0048 552 MobiDBLite consensus disorder prediction 287 301 - -
Lal6g0048 552 SUPERFAMILY WRKY DNA-binding domain 222 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal6g0048 552 MobiDBLite consensus disorder prediction 1 33 - -
Lal6g0048 552 SUPERFAMILY WRKY DNA-binding domain 375 443 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal6g0048 552 Gene3D WRKY domain 218 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal6g0048 552 ProSiteProfiles WRKY domain profile. 378 443 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g0048 552 MobiDBLite consensus disorder prediction 274 361 - -
Lal6g0048 552 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 26 530 IPR044810 GO:0003700
Lal6g0048 552 MobiDBLite consensus disorder prediction 315 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0048 Lal-Chr6 300965 306779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0048 34 551 WRKY Transcription Factor Family AT4G26640 53.506 9.98e-165 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal6g0048 WRKY 3.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0048 - - lang:109360250 960.674
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0048 6 300965 306779 Lal6g0048 6 300965 306779 ECH
Lal18g1604 18 17518395 17523174 Lal6g0048 6 300965 306779 LSH
Lal3g0816 3 7424891 7432952 Lal6g0048 6 300965 306779 PCT
Lal18g1604 18 17518395 17523174 Lal6g0048 6 300965 306779 PCT
Lal6g0048 6 300965 306779 Lal3g0816 3 7424891 7432952 PCT
Lal6g0048 6 300965 306779 Lal18g1604 18 17518395 17523174 PCT