Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0020 ATGCTCCCTCCGCGTCAGCAATCACATGTTGGAGGATTTCAAACATCTCTGTCTCTGGTTTCTCCAGATCCTCGCCTTTCTCCAGAGGAACCTCGTTCGAACTCTGACAATCTCCATGAATCTCCAACTGAAAGTGCCAGTTCTCGAGAAACTTGGCCTACTGCTGTTGCAATTGTGGCAAAGAAGATGGATAATGGAAAAACTGAGATTGATATCCCTGAGCAGTCGGTTATTCGCCGTGTTTCTAGTGCAGACAAAATTAGTCTTCAGGACATTGCAAGAGAAAGAGTTGATATAATCTATGAAAAAATGCACCGTCTACCTAATGAATTTCTAGAAGAGCTGAAAAATGGACTTAGAGTTATCCTTGAGGGAGGGAATGACTCACAGCATAGAGATGAGTTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGATCTGATTTAACAGCCAAGACATTGATTAGAGCGCACCGTGTGCAGCTTGAAATCCTTGTTGCCATAAATACTGGAATTCAAGGATTCTTACATCCTAGCATTACTCTATCACAGACTTCCCTAATTGAGATATTTGTGTATAAGAGATGCAGAAACATAGCTTGCCAAAACCAGCTTCCAGCTGATGATTGTACCTGTGATACATGCACCAGCAACAATGGTTTCTGCAATCTTTGCATGTGTGTAATCTGCAGCAAGTTTGACTTTGAAGTAAATACATGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGTGAGCAACTTATTTGCACGGGCCTTTCTGTGAAAAGTGGAGTAGGACCAAGTGAAATGGTTTTCAGGTGTCAAGCATGCAACAGGACTTCAGAACTGTTGGGTTGGGTCAAAGATGTCTTCCAACATTGTGCCCCATCATGGGATGGAGAGGCCTTATTGAGGGAACTTGATTTTGTTAGTAGGATCTTTCATGGTAGTAAAGACTCGCGAGGGAGAAAACTATTTTGGAAGTGTGATGATCTCAAGGGAAAATTGAATAGTGGAAAAGTGGATGCTAAGGCAGCATGCAGGGCAATATTGATGGTTTTCCAAGAGCTTGAGATGGACTCTCCAAAGGGCCTGGAAAATGCAGAAAGTGGAAGGCTGATTGCTCCACAGGAAGCATGCAATAGAATTGCTGAAGTGGTACAGGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAAATGAGAATGTTCAAGAAGGCTCGCTTGACTCTCGAAGCTTGTGACCGGGAATTAGCAGATAAGGCCAGAGAAGCAGCAGAACTCAAGATGGATAGGCAAAAAAAGAAGTCACAGATTGAAGAACTGGATAGAATTGTTAGGCTTAAAAATGCAGAGGCTGAGATGTTCCAATTGAAGGCTAATGAGGCTAAACGAGAGGCTGAGAGGCTCCAGAGGATTGCTCTTGCCAAGTCAGATAAATCAGAGGAAGAGTATACTAACAACTATTTGAAACAAAAATTAAGTGAGGCTGAGGCTGAGAAGCAATATCTGTATGAGAAGATCAAATTGCAGGAGAGTTCTCGTGTATCACAGAGCAGTAGTGGTGGTGACCCCTCTCCGATGCTGATGTATTCCAAAATCCACGATCTTCTCTATAATGTTCCTCCAATGCCAGATAGTCAATCCAATGATTGTCACCCCCGATGA 1692 0.4279 MLPPRQQSHVGGFQTSLSLVSPDPRLSPEEPRSNSDNLHESPTESASSRETWPTAVAIVAKKMDNGKTEIDIPEQSVIRRVSSADKISLQDIARERVDIIYEKMHRLPNEFLEELKNGLRVILEGGNDSQHRDEFFILQKLVQSRSDLTAKTLIRAHRVQLEILVAINTGIQGFLHPSITLSQTSLIEIFVYKRCRNIACQNQLPADDCTCDTCTSNNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICTGLSVKSGVGPSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALLRELDFVSRIFHGSKDSRGRKLFWKCDDLKGKLNSGKVDAKAACRAILMVFQELEMDSPKGLENAESGRLIAPQEACNRIAEVVQEAIRKMEMVADEKMRMFKKARLTLEACDRELADKAREAAELKMDRQKKKSQIEELDRIVRLKNAEAEMFQLKANEAKREAERLQRIALAKSDKSEEEYTNNYLKQKLSEAEAEKQYLYEKIKLQESSRVSQSSSGGDPSPMLMYSKIHDLLYNVPPMPDSQSNDCHPR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0020 563 MobiDBLite consensus disorder prediction 1 52 - -
Lal6g0020 563 PIRSF UCP025218 1 552 IPR004082 -
Lal6g0020 563 Pfam Coiled-coil region of Oberon 413 546 IPR032535 -
Lal6g0020 563 Pfam PHD - plant homeodomain finger protein 195 318 IPR032881 -
Lal6g0020 563 PANTHER PROTEIN OBERON 2 1 554 - -
Lal6g0020 563 SMART PHD_3 225 285 IPR001965 -
Lal6g0020 563 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Lal6g0020 563 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Lal6g0020 563 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Lal6g0020 563 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Lal6g0020 563 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Lal6g0020 563 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 305 324 IPR004082 -
Lal6g0020 563 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 468 IPR004082 -
Lal6g0020 563 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 487 509 IPR004082 -
Lal6g0020 563 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 554 IPR004082 -
Lal6g0020 563 MobiDBLite consensus disorder prediction 1 22 - -
Lal6g0020 563 MobiDBLite consensus disorder prediction 38 52 - -
Lal6g0020 563 Coils Coil 419 488 - -
Lal6g0020 563 CDD PHD_OBE1_like 225 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0020 Lal-Chr6 145972 149008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0020 195 297 PHD Gene Family AT5G57380 31.132 2.97e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0020 - - gmx:100803870 1011.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1644 18 17775779 17779880 Lal6g0020 6 145972 149008 LSH