Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0015 ATGGAATATAGTGCCCTAATTCACAATTCTAGTGTGTTTGGGAGCTTCTCATCAGACACAGATGAAGCAGCAGATGAGTTGTTAGCAGAAGGTTGCTGGGTGGAAACAACAGGTGGAGATCATATTCAGCAGCATCAAGATATTGAAATTAATGAAGGATCATTTGTGGGTAAGAGATGGTGGATAGGGCCATCATCATCATCAACATCATCATCAGTGAAAGAAAGATTAGTGGTTTCTGTTGGATACTTGAAAGAGTACACTAAGAACACCAACGTCCTCATTCAGATATGGGTCCCCCAAAGCAGCAGATCATCAGGCTTTGAGTTTAATCATGACTTGGTGGTGACTCCAACAAATCCAAACACAAATGTTAGGTTCTTTAGAAGCCAGGATTACCCGCGGGTTCATCATCAATTGCAGCAGTACGATGTACGAGGATGTTTGGCCCTTCCTGTCTTCCAACGTGGCACTGCTACATGCCTTGGTTTCCTTGAGATTAATACTACTAATAACCATAACTCTTCATCTTTCATCAACTATCATCATCGCCCACAACAACTTATTGACAACAATCTCTCCATTCCTCTCGACCACGCTGGTGGTGATTTTAGGAGTTGTCATCAAAACTTCATTCCACCATCTTCTGTAAAGGTATATGATGAGTTGTACCAAGCAGCACTGGATGAGATTGTAGATGTGCTGACATCAGTGTGCAAGACACACAATTTACCTTTAGCACTCACTTGGGCACCTTGCATCCAGCAAGGCAAGTGTGGTTGTGGCCATTCCACCACTGATCAGAATTATGTGTATTGTGTATCAACCGTAGATTCAGCATGTTTTGTTGCAGATCTAGACATCCTTGGATTCCAAGAAGCATGCTCACAATATCACCTATTCAGAGGCCAAGGAATAGTTGGAACAGCATTCACTACAGCCAAACCTTGTTTTGCTATTGATATCACAGCCTTTAGCAAAGCTGAATATCCTCTTTCTCACCATGCAAGCATGTTTGGGTTGCATGCTGCTGTTGCCATTCCACTTAGGAGTGTCTACACTGGTTCTGCTGATTTTGTTTTGGAGTTTTTCCTCCCAAAGGACTGCCATGACCCAGAAGAGCAAAGGCACATGTTGAAATCATTGTCCATGTTGGTACAACAAGCTTGCCGGAGCTTGCATGTTGTGACTGAGGATGAATTCACTTTGCCACTACTACCACCACCACCACCATCATACAACAAAGAAGAAGATGCTCATATGATTGAGAAATTATTATTTGCATCTACTCCGTGTTCTTCGTCACAAGTAGAATCATCACCATCATGGATAGCACATATGATGGAGGCACAACAGAAGGGGAAAGGTGTGTCAGTGTCGTTGGAGTATCAAGTGGAAGAAGCAAAAGAGGAGTTCAAAGTGACAAACTGGGATGGAAGTAACGAGTTGGTGGAGGCAGAGAGAAGAGAAGTGTTTTCAGAATTGAGTGAGCTAAGTTCAGGGTCAAGATCAAGAGCAAGTACGGTAGAGGTTGGTAGTGGAGGTGGAGAAGAATGTTATTCATTTAGTGGAAGGCATTCATCATCAATAACAACTAATTCAGGTTGTGGTTTGAGAAAGACAGGAGAGAAGAGAAGAACCAAGGCAGAGAAGACTATCAGCTTGCCAGTTCTCAGACAATACTTTGCTGGAAGCCTAAAAGATGCTGCCAAGAGTATTGGAGTATGCCCTACAACTCTAAAAAGGATATGCAGACAGCACGGTATAACCCGGTGGCCATCAAGGAAAATAAAAAAGGTAGGACACTCTTTAAAGAAACTTCAGCTGGTGATTGATTCAGTGCAGGGTGCTGAGGGTGCCATTCAGATAGGGTCATTCTATACCAGTTTTCCAGAGTTGTGTTCTGCTAGTGCCCGTTCTGATTCATCTAACAAAATGCATACTTATCATCCCAAGGCAGAGTCTGAAAATAATAACAACAACAACAACAATGGGTTTTATAATGGAGATGCTTGCAGTCAGAACTTTGAAGCTTCAACTATGATCAACAACATTAATAACAATGGAGGAGTTGATGTTGTAATGATGACAGAAAGCCCTCCTGATCATCATCATCATCATGCATTTCTCAACAGAGAGTTGACAATGCAAGAGGATACAAGATCCAAGGCAGGTCTTAGAGTGAAAGCTACTTTTGTGGATGAAAAAATAAGATTTAGCTTGCAAACAAATTGGGGTTTCAGAGAATTGGAGGTTGAGATAAGAAGTCGTTTCAACCTAAATGATATGAGGAATATTGATGTAAAGTATTTGGATGATGAAGGAGAGTGGGTTGTGTTAGCATGTGATGCTGATCTTGAGGAGTGTAAAGACTTGCACAGGTTATCACAAGGACGCACAATTAGGCTCTCACTCTTTCAATCTTCTCCTAATAATAATAATAATAATAATAATAATGTACCAACTATCTTTGGTGGTTGCACCAGCACCAGCACCAGCACCAGCCCTTCATCCTCATACTAG 2523 0.4178 MEYSALIHNSSVFGSFSSDTDEAADELLAEGCWVETTGGDHIQQHQDIEINEGSFVGKRWWIGPSSSSTSSSVKERLVVSVGYLKEYTKNTNVLIQIWVPQSSRSSGFEFNHDLVVTPTNPNTNVRFFRSQDYPRVHHQLQQYDVRGCLALPVFQRGTATCLGFLEINTTNNHNSSSFINYHHRPQQLIDNNLSIPLDHAGGDFRSCHQNFIPPSSVKVYDELYQAALDEIVDVLTSVCKTHNLPLALTWAPCIQQGKCGCGHSTTDQNYVYCVSTVDSACFVADLDILGFQEACSQYHLFRGQGIVGTAFTTAKPCFAIDITAFSKAEYPLSHHASMFGLHAAVAIPLRSVYTGSADFVLEFFLPKDCHDPEEQRHMLKSLSMLVQQACRSLHVVTEDEFTLPLLPPPPPSYNKEEDAHMIEKLLFASTPCSSSQVESSPSWIAHMMEAQQKGKGVSVSLEYQVEEAKEEFKVTNWDGSNELVEAERREVFSELSELSSGSRSRASTVEVGSGGGEECYSFSGRHSSSITTNSGCGLRKTGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYTSFPELCSASARSDSSNKMHTYHPKAESENNNNNNNNGFYNGDACSQNFEASTMINNINNNGGVDVVMMTESPPDHHHHHAFLNRELTMQEDTRSKAGLRVKATFVDEKIRFSLQTNWGFRELEVEIRSRFNLNDMRNIDVKYLDDEGEWVVLACDADLEECKDLHRLSQGRTIRLSLFQSSPNNNNNNNNNVPTIFGGCTSTSTSTSPSSSY 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0015 840 MobiDBLite consensus disorder prediction 641 663 - -
Lal6g0015 840 ProSiteProfiles RWP-RK domain profile. 539 620 IPR003035 -
Lal6g0015 840 SMART PB1_new 725 808 IPR000270 GO:0005515
Lal6g0015 840 CDD PB1_NLP 726 807 IPR034891 -
Lal6g0015 840 SUPERFAMILY CAD & PB1 domains 725 811 - -
Lal6g0015 840 Pfam RWP-RK domain 553 600 IPR003035 -
Lal6g0015 840 Pfam PB1 domain 727 807 IPR000270 GO:0005515
Lal6g0015 840 ProSiteProfiles PB1 domain profile. 725 808 IPR000270 GO:0005515
Lal6g0015 840 MobiDBLite consensus disorder prediction 807 840 - -
Lal6g0015 840 Gene3D - 722 811 - -
Lal6g0015 840 PANTHER PROTEIN NLP2 42 814 - -
Lal6g0015 840 PANTHER PROTEIN NLP8 42 814 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0015 Lal-Chr6 113802 117178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0015 11 809 NLP Transcription Factor Family AT2G17150 39.371 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lal6g0015 PB1 5.1e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0015 - - lja:Lj0g3v0358659.1 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1673 18 17935066 17938726 Lal6g0015 6 113802 117178 LSH