Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0013 ATGGGCAACACATGCCGCGGATCTTTCAAAGGAAAATATACTCACGCCTTCTCTCACCCCCAACACGACAACAACAATAGTAGTAATTCCAACACCACTCATTCTGATGATCCTGAAGACAACAACAACAATAGTAATTCCAACCTTATCATCAAACAAGAACAAGAACAAGAACAAGAACCCAACATCATCAAGAAAGACACCATCATGCGGCGTGGCCCCGATAACCAAGCTTATTATGTCTTGGGTCACAAGACTCCCAACATCCGTGATCTATACACTCTTGGTCGTAAACTAGGACAAGGACAATTTGGAACCACTTATTTATGCACCCATAATTCCACCTCCCTTCAATATGCTTGCAAATCCATCTCCAAGAGAAAGTTGATTTCCAAAGAAGATGTGGAGGATGTTCGCAGGGAAATCCAAATTATGCATCATTTGGCAGGTCACAATAACATTGTCACCATCAAGGGTGCTTATGAGGATCCACTCTATGTTCATATTGTCATGGAGCTTTGTTCCGGTGGTGAGTTGTTTGATCGCATCATCCAGAGGGGTCACTACACTGAAAGGAAGGCTGCTGAGTTGACTAAAATCATTGTCGGTGTTGTTGAGGCTTGTCATTCCCTTGGTGTTATGCATAGAGATCTCAAGCCTGAAAATTTCTTGTTGGTTAATAAGGATCACGATTTCTCTCTTAAAGCAATTGACTTTGGCCTCTCTGTTTTCTTCAAACCAGGTCAAGTTTTCACTGATGTAGTTGGCAGCCCATACTATGTTGCTCCTGAGGTTCTCCTCAAACATTATGGGCCTGAAGCTGATGTTTGGACTGCTGGTGTCATACTATACATATTGCTTAGCGGTGTGCCACCATTTTGGGCAGAAACCCAGCAGGGTATATTTGATGCAGTATTGAAGGGACATATAGATTTTGAATCAGACCCATGGCCTCTAATATCTGATAGCGGAAAAGATCTGATTAGAAAGATGTTGTGTTCTCGGCCTTCAGAACGGTTGACTGCTCATGAAGTATTATGTCATCCTTGGATATGTGAAAATGGTGTTGCTCCTGACAGAGCACTGGATCCAGCTGTTCTTTCTCGTCTCAAACACTTCTCTGCAATGAATAAGCTAAAGAAGATGGCTTTGCGGGTAATTGCTGAAAGTCTATCCGAAGAGGAGATTGCTGGTTTGAGAGAAATGTTTCAGGCTATGGATACTGATAACAGTGGTGCAATCACTTTTGATGAACTCAAAGCCGGTCTGAGAAGATATGGGTCTACCCTTAAGGATACAGAAATACGTGATCTTATGGAAGCGGCTGATGTTGACAACAGTGGAACTATAGATTATGGGGAATTTATCGCTGCAACAGTTCATCTCAACAAACTAGAGCGTGAGGAACATCTCATTGCAGCATTCCACTACTTTGACAAGGACGGGAGTGGTTATATCACAGTTGATGAACTTCAACAAGCTTGTGCAGAACATAATATGACTGATGTTTTTCTTGAAGATATTATTAGGGAAGTTGATCAAGATAATGATGGAAGGATTGATTATGGTGAATTTGCTGCTATGATGCAAAAAGGCAATCCTGGAGTTGGAAGGAGGACTATGCGCAACAGTTTGAATTTGAGCATGAGAGATGCGCCAAACCCTCATTAG 1671 0.4207 MGNTCRGSFKGKYTHAFSHPQHDNNNSSNSNTTHSDDPEDNNNNSNSNLIIKQEQEQEQEPNIIKKDTIMRRGPDNQAYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTHNSTSLQYACKSISKRKLISKEDVEDVRREIQIMHHLAGHNNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYTERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDHDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFESDPWPLISDSGKDLIRKMLCSRPSERLTAHEVLCHPWICENGVAPDRALDPAVLSRLKHFSAMNKLKKMALRVIAESLSEEEIAGLREMFQAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMEAADVDNSGTIDYGEFIAATVHLNKLEREEHLIAAFHYFDKDGSGYITVDELQQACAEHNMTDVFLEDIIREVDQDNDGRIDYGEFAAMMQKGNPGVGRRTMRNSLNLSMRDAPNPH 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0013 556 Gene3D - 361 532 - -
Lal6g0013 556 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 541 - -
Lal6g0013 556 MobiDBLite consensus disorder prediction 18 46 - -
Lal6g0013 556 ProSitePatterns EF-hand calcium-binding domain. 407 419 IPR018247 -
Lal6g0013 556 SUPERFAMILY Protein kinase-like (PK-like) 75 376 IPR011009 -
Lal6g0013 556 Pfam Protein kinase domain 93 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0013 556 ProSiteProfiles EF-hand calcium-binding domain profile. 394 429 IPR002048 GO:0005509
Lal6g0013 556 ProSiteProfiles EF-hand calcium-binding domain profile. 430 465 IPR002048 GO:0005509
Lal6g0013 556 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
Lal6g0013 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Lal6g0013 556 ProSiteProfiles EF-hand calcium-binding domain profile. 505 535 IPR002048 GO:0005509
Lal6g0013 556 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Lal6g0013 556 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 4 25 541 - -
Lal6g0013 556 ProSitePatterns EF-hand calcium-binding domain. 479 491 IPR018247 -
Lal6g0013 556 ProSiteProfiles EF-hand calcium-binding domain profile. 466 501 IPR002048 GO:0005509
Lal6g0013 556 ProSiteProfiles Protein kinase domain profile. 93 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0013 556 ProSitePatterns EF-hand calcium-binding domain. 513 525 IPR018247 -
Lal6g0013 556 SMART efh_1 504 532 IPR002048 GO:0005509
Lal6g0013 556 SMART efh_1 470 498 IPR002048 GO:0005509
Lal6g0013 556 SMART efh_1 398 426 IPR002048 GO:0005509
Lal6g0013 556 SMART efh_1 434 462 IPR002048 GO:0005509
Lal6g0013 556 SMART serkin_6 93 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0013 556 MobiDBLite consensus disorder prediction 1 46 - -
Lal6g0013 556 Pfam EF-hand domain pair 469 530 IPR002048 GO:0005509
Lal6g0013 556 Pfam EF-hand domain pair 399 459 IPR002048 GO:0005509
Lal6g0013 556 Gene3D Transferase(Phosphotransferase) domain 1 179 360 - -
Lal6g0013 556 SUPERFAMILY EF-hand 375 532 IPR011992 -
Lal6g0013 556 Gene3D Phosphorylase Kinase; domain 1 95 178 - -
Lal6g0013 556 CDD STKc_CAMK 93 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0013 Lal-Chr6 99387 104067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0013 1 552 EF-hand Containing Proteins AT4G35310 81.462 0.0 947
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal6g0013 Pkinase 1.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0013 K13412 - gmx:100778173 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1678 18 17986256 17992141 Lal6g0013 6 99387 104067 LSH