Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0009 ATGGGAATAGGTTGCGTAGTGTGGCAGCAGTATAATCCCAGCCTCCTTGCTTCTTTCTGTATTAATGATATTGAAGAGGAGCATGCTCATGCTGTAACACTTATTACAAGAACAACAACAACAACAACAACACGCTCCTTGTTCTCCCTTTCTCCTTCTTTTACTATCATAAAAAAGAATGGGCGAATTAGGCGAATGAGAAGTCCCTTTTGTATTCCTCAAAGTCAAAACACACAAGATGATAATGATAATGATGAAATTGAATGGAAGCAAAACATTCGAAATTCAGGAATCATATCTTCTTGCCTGGTTGGTCTCCTCACCGGCATCGCTGTGGTACTCTTCAATAGTGTTGTGCATGAAATTCGTGATTTTGTGTGGGATGGGATCCCCTCTCGTGGGGCATCCTGGTTAAGAGAAGCTCCTATTGAGGAAACCTGGAGTAGAGTCATATTAGTTCCCACTTTTGGAGGTGTCATTGTTTCCCTATTGAACTCCATTACTCAACGTCTTCATCACTCTTCTGCTTCCCGCCCTTTCTTCAAAGCTGTCTCAGCTTCTATTACTTTAGGCACTGGTAATTCCTTAGGTCCTGAGGGTCCCAGTGTTGACATTGGTACTTCCATTGCCAAAGCTGTAGGTTCTTTCTTTGAAAACAACAACAACAACAACAACAACAACAACAAGAGAATGCTCTCTCTTCGTGCTGCTGGATCCGCTGCTGGCCTCTCTTCAGGTTTCAATGCTGCTGTTGCTGGTTGTTTTTTTGCTGTAGAGTCTGTCTTGTGGCCTTCACCTGCTGCCTCAGATGATGATGATGATGATACACCATCTTTGCCACTTACAAATACAACTTCTATGGTAATACTTAGTGCTGTCATAGCTTCAGTAGTTTCCGAGATTGGCCTTGGCTCTCAACCAGCCTTTAGAGTTCCAGAATATGACTTCCGTTCTCCCAGTGAGCTCCCACTCTATCTATTGCTGGGTATTCTCTGTGGCTTGGTATCATTGGCCCTATCTCGGTGTACATCATATATGTTGACTATTATTGACAATCTTCCTAAGACCACTGGCATACCAAGAGCTTCATTCCCTGTATTGGGAGGGTTATCAGTTGGTATCATAGCTTTGTTATATCCTGAGATCCTTTACTGGGGTTTTGAGAATGTTGACATCTTGTTGGAATCTAGGCCATTTTTTAAAGGCCTTTCCACTGACCTATTGCTTCAGCTAATAGCTGTAAAGATAGTTGCAACTTCTCTCTGTCGGGCTTCTGGGTTAGTGGGAGGCTATTATGCCCCGTCGCTCTTTATTGGTGCAGCAACTGGGATGGCTTATGGAAAGTTAATTGGTTTGGCTGTTGCTGAGTTCAATCCTATGATTAATCTCTCCGTCTTAGAAGTGGCATCACCACAAGCTTATGGCCTGGTTGGAATGGCTGCGACTCTTGCAGGAGTTTGTCAAGTACCCCTTACTGCAGTTTTGCTTCTGTTTGAATTGACACAGGACTATCGGATTGTTTTACCACTACTTGGAGCGGTAGGGTTGTCTACATGGGTTTCATCTGTACAAACAAAGAAAGGAGATGCCAGAAGAACAAAAAAGCTCCAGCTAGAAAACACAAATTCTGCTATACTTCCAGAAACATCTTCGCGTTGTTCAATTGAGTCATCTGCTGGTAATTCCGTTGACGAAGGTGTGCCATATTTGAGTAGTTTGTATCAAGTGGATAGTTCACTTCGTGTAGAGGATGATAATGCTGAAACAGCATATCCTGTAAGGAGAACATTTGTTTCGGAAGCCATGAAGACGAGATATGTGACGGTTTCGATGTGCACACTGCTTATCGAAGTAATAGATCTCATGCTTTCAGAGAAAGAGTCTTGTGCAGTAATTGTTGATACTGATGATAGTTTGATTGGTTTACTGACACTAAGAGACATTCAAGAGTATGGAAAATTTGCTAAAGCAAGAAGCAAAGGGCCTAAGGAACTTTTAGTTTCTGAATTATGCCTTTTAAATGGAGGAATATGTAGTATACCATGGACAGCCACGCCTGATATGGAACTTGGTTATGCTCAAAAGAGTATGAAGAAGCATGGAATCGATCATGTTCCAGTTGTGAGGAATGTCTATGAAAGATCATACCCAGTTGGCATATTAGACCGTGATAGTATCAGTATAACATGCAGTGCTTTGGACACCCGACAGTCCCTAAGCTAA 2223 0.4229 MGIGCVVWQQYNPSLLASFCINDIEEEHAHAVTLITRTTTTTTTRSLFSLSPSFTIIKKNGRIRRMRSPFCIPQSQNTQDDNDNDEIEWKQNIRNSGIISSCLVGLLTGIAVVLFNSVVHEIRDFVWDGIPSRGASWLREAPIEETWSRVILVPTFGGVIVSLLNSITQRLHHSSASRPFFKAVSASITLGTGNSLGPEGPSVDIGTSIAKAVGSFFENNNNNNNNNNKRMLSLRAAGSAAGLSSGFNAAVAGCFFAVESVLWPSPAASDDDDDDTPSLPLTNTTSMVILSAVIASVVSEIGLGSQPAFRVPEYDFRSPSELPLYLLLGILCGLVSLALSRCTSYMLTIIDNLPKTTGIPRASFPVLGGLSVGIIALLYPEILYWGFENVDILLESRPFFKGLSTDLLLQLIAVKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKLIGLAVAEFNPMINLSVLEVASPQAYGLVGMAATLAGVCQVPLTAVLLLFELTQDYRIVLPLLGAVGLSTWVSSVQTKKGDARRTKKLQLENTNSAILPETSSRCSIESSAGNSVDEGVPYLSSLYQVDSSLRVEDDNAETAYPVRRTFVSEAMKTRYVTVSMCTLLIEVIDLMLSEKESCAVIVDTDDSLIGLLTLRDIQEYGKFAKARSKGPKELLVSELCLLNGGICSIPWTATPDMELGYAQKSMKKHGIDHVPVVRNVYERSYPVGILDRDSISITCSALDTRQSLS 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0009 740 Pfam Voltage gated chloride channel 163 521 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal6g0009 740 PRINTS Chloride channel signature 182 201 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal6g0009 740 PRINTS Chloride channel signature 240 259 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal6g0009 740 PRINTS Chloride channel signature 427 447 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal6g0009 740 PRINTS Chloride channel signature 472 488 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal6g0009 740 PRINTS Chloride channel signature 490 509 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal6g0009 740 SUPERFAMILY CBS-domain pair 594 726 IPR046342 -
Lal6g0009 740 Gene3D - 594 739 IPR046342 -
Lal6g0009 740 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 77 731 - -
Lal6g0009 740 ProSiteProfiles CBS domain profile. 602 658 IPR000644 -
Lal6g0009 740 SMART cbs_1 605 653 IPR000644 -
Lal6g0009 740 SMART cbs_1 680 731 IPR000644 -
Lal6g0009 740 Gene3D Clc chloride channel 82 541 - -
Lal6g0009 740 CDD CBS_pair_voltage-gated_CLC_euk_bac 602 727 - -
Lal6g0009 740 Pfam CBS domain 598 650 IPR000644 -
Lal6g0009 740 SUPERFAMILY Clc chloride channel 98 527 IPR014743 -
Lal6g0009 740 CDD Voltage_gated_ClC 105 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0009 Lal-Chr6 84145 88154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0009 80 261 Ion Channels AT3G27170 26.540 5.90e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0009 - - gmx:100812959 968.763