Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0008 ATGGATAACGAGGTGTTAGAATTTGATATTGGGTTGGGAAGAGAAGAAGAATACGATGATGAAGCTGATGTTGATGGAGTAGGTAACATTGAATTTGCTGCTGATGGCTGTAGCAAAGGTAATGAAATTTATATGATTCCTCCTCCTGAGGCTGAGGCTGAGGCTGAGGCTGAGACTGAGACTGGTGATGAGGGCATGATGTTAGACCTCTTAGATCTTGAACCTTACGAGGGTATGGAATTCGAGTCTGAGGAAGCTTCCAAGGCCTTTTATAATTCTTATGCACGCCGTGTTGGCTTCAGTACTCGTGTCAGCTCATCTCGTCGTTCCAGGCGAGACGGAGCCATCATACAGAGACAATTTGTTTGTGCAAAGGAAGGGTTTCGCAACTTGAATGAGAAACGTACCAAGGATAGGGAGATCAAGCGCCCCCGAACTATTACTAGAGTCGGATGCAAAGCATCTCTTTCTGTCAAAATGCAAGATTCTGGCAAGTGGGTTGTGTCTGGGTTTGTTAGAGAACATAATCATGAATTGGTTCCACCAGATCAGGTGCATTGCCTTCGCTCTCACAGGCAAATATCAGGAGCTGCCAAAACCCTCATTGATACTTTACAGGCTGCTGGAATGGGCCCTCGTAGAATTATGTCTGCACTCATTAAAGAGTATGGCGGGATTAGCAAAGTCGGCTTTACAGAGGTTGACTGTAGGAATTACATGAGGAATAATCGTCACAGAAGTTTAGAAGGGGACATTCAACTCGTTCTAGATTATTTGAGACAAATGCATGCTGAAAACCCTAATTTCTTCTATGCCGTGCAAGGTGATGAAGACCAATCCATGAACAATGTCTTCTGGGCTGATCCCAAGGCAAGGATGAACTATAAATTTTTTGGTGATACTGTAACTTTTGATACTACTTATCGATCCAATAGGTACCGGTTACCCTTTGCTCCCTTTACTGGTGTAAACCATCACGGACAGCCTGTTCTCCTTGGTTGCGCTTTCCTAATAAATGAATCTGAAGCATCATTTGTATGGCTTTTCAAGACGTGGCTTATGGCCATGTCTGGACACTCTCCAATGTCAATAACAACCGATCATGATTCCGTAATTCGGTCAGCCATAATACAAGTATTCCCTGAGACCCGTCACCGTTTCTGCAAGTGGCACATCTTTAAAAAATGCCAGGAGAAGTTATCTCATGTCTTCCTCCAACATCCAAATTTCGAAGCTGAATTTCACAAATGTGTTAACTTGACTGAGTCCATTGAGGAGTTTGAGTCTAACTGGTCAACACTTGTCAATAGATATGATCTCAGGGACCATGAATGGCTTCAAGCACTATATTCTGATTGCAGGCAGTGGGTACCAGTATACTTGCGGGATACATTCTTTGCAGAAATGTCTATCACTCAGCGAAGTGATAGCATGAACTCATACTTTGATGGTTATGTAAATGCTTCAACCAATTTAAATCAGTTCTTTAAGCTGTATGAGAAAGCACTGGAAAGTCGCAATGAGAAAGAAGTTAGAGCGGATTATGACACAATGAACACTTTACCAGTATTGAGGACCCCATCTCCAATGGAGAAGCAAGCATCCGAGCTTTACACTAGAAAAATTTTCATGAGGTTCCAGGAAGAGTTAGTTGGGACACTAACATTCATGGCATCCAAGGCTAAGGATGATGGAGAGGTCATTACATATCATGTAGCAAAATTTGGAGAGGACCATAAATCATACCATGTCAAATTCAATGTTTTGCAGATGAAAGCTACATGTAGTTGCCAAATGTTTGAGTTCTCTGGCCTTCTCTGTAGACATGTTTTGGCAGTCTTTAGAGTAACCAATGTGCTTACTCTCCCATCTCATTATATATTGAAACGCTGGACAAGAAATGCCAAGAGCAATGTAATATTACAAGAACATTCTTGTGATGTATATACTTACTATTTAGAATCTCATACAGTCAGATATAATACCCTTCGGCGTGAGGCCTTTAAATTTGTTGACGAAGGAGCAAAATCTCCTGAAACTTATGATGTTGCAATGGATGCTTTACAAGAAGCTGCAAAAAGAGTTGCTCATGCGATGCAAAATGAGGGAAGAGTTCCTATCAACAATGGAAAAGTTAGGAGTCACTTGCTGAATGATGAAATGCATGATAATTACACAAGTGGATGCCAGGAAGAAAACTTGGGAGAACATATGTCCGAGGATGAAATGGACAAGAATATTAGAGAACTTATGAATGAGCTTGACGGTGCATATAGGAAATGTGAAATTTACCGGTCCAACCTGCTCTCAGTTTTGAAAGCTGTTGAGGATCATAAGTTAGAGTTGTCCGTTAAGGTGGAAAATATCAAGATAAGCATGAAAGATAGCCTCTAA 2394 0.4131 MDNEVLEFDIGLGREEEYDDEADVDGVGNIEFAADGCSKGNEIYMIPPPEAEAEAEAETETGDEGMMLDLLDLEPYEGMEFESEEASKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGAAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRHRSLEGDIQLVLDYLRQMHAENPNFFYAVQGDEDQSMNNVFWADPKARMNYKFFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLLGCAFLINESEASFVWLFKTWLMAMSGHSPMSITTDHDSVIRSAIIQVFPETRHRFCKWHIFKKCQEKLSHVFLQHPNFEAEFHKCVNLTESIEEFESNWSTLVNRYDLRDHEWLQALYSDCRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLNQFFKLYEKALESRNEKEVRADYDTMNTLPVLRTPSPMEKQASELYTRKIFMRFQEELVGTLTFMASKAKDDGEVITYHVAKFGEDHKSYHVKFNVLQMKATCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSHYILKRWTRNAKSNVILQEHSCDVYTYYLESHTVRYNTLRREAFKFVDEGAKSPETYDVAMDALQEAAKRVAHAMQNEGRVPINNGKVRSHLLNDEMHDNYTSGCQEENLGEHMSEDEMDKNIRELMNELDGAYRKCEIYRSNLLSVLKAVEDHKLELSVKVENIKISMKDSL 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0008 797 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 69 763 IPR031052 GO:0006355
Lal6g0008 797 ProSiteProfiles Zinc finger SWIM-type profile. 582 618 IPR007527 GO:0008270
Lal6g0008 797 Coils Coil 740 767 - -
Lal6g0008 797 Pfam SWIM zinc finger 570 616 IPR007527 GO:0008270
Lal6g0008 797 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 69 763 - -
Lal6g0008 797 SMART 26again6 593 620 IPR006564 GO:0008270
Lal6g0008 797 Pfam MULE transposase domain 302 395 IPR018289 -
Lal6g0008 797 Pfam FAR1 DNA-binding domain 90 181 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0008 Lal-Chr6 78543 82622 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lal6g0008 MULE 4.1e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0008 - - gmx:100793442 1386.7