Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0002 GAGCTTTCCAAAGTGTTCCTCTTGACATGCACACTTTCACATGAACCAATTATCAGTGCAATCACAGTTTGTAAGCATAAGAAAGGAGAGAGTTTGACTGAAGGAACTGAGTGTTCTGTTTGTTTGAGTGAGTTTCAAGAAGATGAGAGTCTAAGACTTTTGCCTAAGTGTCATCGTGCTTTTCATTTACCTTGTATTGATACTTGGCTTGCATCTCATACCAATTGTCCTATGTGTAGAGCTCCAATTGTTACCAACCTTACAAGGATTCCATCTCTTATGCCTAATAATGTTGTTGTTGATCCAACTTCATTGGAAAATAGTGCTCCTCATACCCCTCAAGGACTTGAACTTAGGAATGGTTCAGAAGAAGAAGGAGAATTGGAAGTTCAAGATGAGACAAGGGTATGTGAAACTGAAAGTGTTGTGGTGAATATAAGACCAAGAAGATCTGTTTCTTTGGATTCATCTTCTGTTGCAAATATCAATCTTGCTTTTGCAAATGTTCAATCATCAGTTCAAAGTGGTGAAAATGAAGGGATTGTTTCAAAGAGGTTTATTGCTGGAAATGAGAATTTTCCAACTACGTCCAATTCCAAAAGAAGCTCATCTTTTAGGACAAGATATCAGCATATCTACGAAGTTACTAACTCCTAG 657 0.376 ELSKVFLLTCTLSHEPIISAITVCKHKKGESLTEGTECSVCLSEFQEDESLRLLPKCHRAFHLPCIDTWLASHTNCPMCRAPIVTNLTRIPSLMPNNVVVDPTSLENSAPHTPQGLELRNGSEEEGELEVQDETRVCETESVVVNIRPRRSVSLDSSSVANINLAFANVQSSVQSGENEGIVSKRFIAGNENFPTTSNSKRSSSFRTRYQHIYEVTNS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0002 218 ProSiteProfiles Zinc finger RING-type profile. 38 80 IPR001841 -
Lal6g0002 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Lal6g0002 218 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 14 211 IPR044675 -
Lal6g0002 218 SUPERFAMILY RING/U-box 30 88 - -
Lal6g0002 218 Pfam Ring finger domain 37 80 IPR001841 -
Lal6g0002 218 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 211 - -
Lal6g0002 218 SMART ring_2 38 79 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0002 Lal-Chr6 9940 10671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0002 14 204 C3H Transcription Factor Family AT5G17600 37.387 7.85e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0002 - - lja:Lj6g3v2193690.1 204.912