Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1867 ATGGGAAGGAAAAAGACAGAGGATGCTGTCTCATCTGCAAAGGCTAAAGCAGGTGGGAAGGATAATACTAAGAAGGAAAAGTTTTCTGTCTCTGCCATGCTGGCTGGTATGGATGAAAAACCTGATAAACCCAAAAAGGTTGCTTCTTCGTCTAGCAAGCCGAAGGTGAAGTCTGCCCCAAAAGCTTCCACATACACTGATGGCATTGATCTTCCCCCCTCTGACAATGAAGATGATGAAGATCTTTTGGTATTGGAGCAACAACAAAATAATACATCCAAACGGTCAACCCAGCAGCAAAGGCCTGATGTCAAGCAACTTGAGGTATCTATTGCAGAAAAGGAGTTGAAGAAGCGTGAAAAGAAGGACATTTTAGCTGCCTACGCTGTTGAGCAGGCAAAGAAAGAAGCTCTTAAGGATGATCATGATGCTTTCACTGTGGTCATCGGAAGCAGGACGTCTGTCCTTGACGGAGAAGATGATGCTGATGCTAATGTCAAAGATATAGCGATAGACAATTTCTCTGTGTCTGCTCGGGGTAAAGAACTGATGAAGAATGCTTCAGTGAGGATATCTCATGGGAAGAGGTATGGTTTGGTTGGGCCCAACGGAAAGGGCAAATCTACCCTACTTAAGCTTCTTGCTTGGAGGAAGATACCAGTGCCTAAGAATATTGATGTCCTTCTCGTTGAACAGGAGGTTGTTGGTGATGATAAAACAGCGCTTGAAGCTGTTGTTTCAGCTAATGAAGAACTTGTTAAAATTCGACAAGAAGTTGCTTCTCTGCAAAGTGAAACTAGTGTGGAAGGAAGTGTAGACAAAGATAATAATGATGAGGAAGATGGTGCAGGAGAGAAGCTAGCTGAGCTCTATGAGAAATTACAGCTGATGGGATCTGATGCTGCTGAAGCTCAGGCATCAAAGATTTTAGCTGGTCTGGGTTTTACAAAGGATATGCAGGGCCGTCCTACGAAATCCTTCAGCGGTGGTTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCAACTCTATTATTGCTTGATGAACCCACAAATCATCTTGACCTGAGAGCTGTTCTCTGGTTAGAGGAGTACTTGAGCCATTGGAAGAAGAGTTTGGTGGTTGTCTCTCATGATAAAGATTTCCTGAATACCGTTTGCTCTGAGATTATTCATCTGCATGATTTGAAACTCCATGTCTATCGAGGAAATTTTGATTCTTTCGAGAGCGGGTATGAACAGCGTCGTAAAGAGATGAATAAGAAGTATGAGGTTTATGACAAGCAATTGAAAGCAGCTAAAAGGAGTGGAAACCGGACTCAGCAAGAAAAGGTGAAGGATCGAGCTAAGTTTGTAGCAGCAAAGGAAGCATCTAAAAGCAAGGGGAAGGGGAAGGTTGATGAGGATGATGCTCCGCAGGAGGCGCCACGGAAATGGAGGGATTACAGTGTTGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCCCCACTTTTGCAGCTTATTGAAGTGAGCTTCAGCTACCCAAATCGGGAGGATTTTAGACTTTCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTCGGTCCTAATGGAGCTGGAAAGTCAACACTGTTGAATCTTCTAGCTGGTGATTTGGATCCAAGTGAGGGTGAAGTTCGAAGGAGTCAGAAGTTGAGAATAGGAAGATATTCCCAACACTTTGTGGACCTTCTAACGATGGATGAAACACCTGTTCAGTATCTTCTTCGTCTCCATCCTGACCAGGAGGGACTTAGCAAGCAGGAGGCTGTCCGTGCTAAACTCGGTAAGTTTGGATTACCTAGTCATAACCATCTTACCCCTATTGCCAAACTGTCTGGAGGGCAGAAATCTCGTGTTGTCTTCACGTCGATATCCATGTCAAAACCCCACATTTTATTGTTAGATGAACCCACAAATCATCTAGATATGCAGAGTATCGATGCTTTGGCTGATGCACTGGATGAATTCACTGGTGGAGTTGTTCTTGTGAGTCATGATTCTAGATTGATATCACGTGTATGTGATGATGAAGAGAGGAGTCAAATCTGGGTTGTTGAAGATGGTACTTGTAGAAGTTTCCCTGGAACATTTGAGGATTACAAGAATGAGTTGTTGAGAGAAATTAAAGCTGAAGTTGAGGATTGA 2190 0.4365 MGRKKTEDAVSSAKAKAGGKDNTKKEKFSVSAMLAGMDEKPDKPKKVASSSSKPKVKSAPKASTYTDGIDLPPSDNEDDEDLLVLEQQQNNTSKRSTQQQRPDVKQLEVSIAEKELKKREKKDILAAYAVEQAKKEALKDDHDAFTVVIGSRTSVLDGEDDADANVKDIAIDNFSVSARGKELMKNASVRISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANEELVKIRQEVASLQSETSVEGSVDKDNNDEEDGAGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLSHWKKSLVVVSHDKDFLNTVCSEIIHLHDLKLHVYRGNFDSFESGYEQRRKEMNKKYEVYDKQLKAAKRSGNRTQQEKVKDRAKFVAAKEASKSKGKGKVDEDDAPQEAPRKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLDPSEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSQIWVVEDGTCRSFPGTFEDYKNELLREIKAEVED 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1867 729 Coils Coil 419 439 - -
Lal5g1867 729 ProSitePatterns ABC transporters family signature. 327 341 IPR017871 GO:0005524
Lal5g1867 729 Gene3D - 466 729 IPR027417 -
Lal5g1867 729 CDD ABCF_EF-3 502 704 - -
Lal5g1867 729 Pfam ABC transporter 519 654 IPR003439 GO:0005524
Lal5g1867 729 Pfam ABC transporter 185 355 IPR003439 GO:0005524
Lal5g1867 729 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 502 727 IPR003439 GO:0005524
Lal5g1867 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 423 IPR027417 -
Lal5g1867 729 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 6 729 - -
Lal5g1867 729 Gene3D - 168 451 IPR027417 -
Lal5g1867 729 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 169 430 IPR003439 GO:0005524
Lal5g1867 729 MobiDBLite consensus disorder prediction 1 105 - -
Lal5g1867 729 MobiDBLite consensus disorder prediction 85 105 - -
Lal5g1867 729 MobiDBLite consensus disorder prediction 437 478 - -
Lal5g1867 729 CDD ABCF_EF-3 169 400 - -
Lal5g1867 729 Coils Coil 245 265 - -
Lal5g1867 729 PANTHER - 6 729 - -
Lal5g1867 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 717 IPR027417 -
Lal5g1867 729 SMART AAA_5 528 704 IPR003593 -
Lal5g1867 729 SMART AAA_5 193 399 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1867 Lal-Chr5 20246538 20248727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1867 502 703 Calmodulin-binding Proteins AT2G36910 28.054 1.57e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1867 K06184 - gmx:100806865 1188.71