Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1863 ATGAAGGGTGGTGCGATGGATCGGACGAAGGTGGTGTTACGCCACTTGCCTCCTTCCCTTTCTGAATCTGCCCTCTCTCAACAAATTGACGCCGTCTTCTCTGGCCGTTACAATTGGCTCTCTTTCCGTTCTGCCAAATTCAGAAGCCAGAAACATGTATCGTATTCTAGAGCGTACATTCAGTTCAAGAGTCAAGATGACGTTTTAGATTTTGCTGATTTCTTTAACGCTCACGTCTTCGTTAATGAAAAAGGTGCTCACTTCAAAGTCATTGTTGAATATGCTCCTTCACAACGTGTTCCAATTCACCGTTCTAAAAAGGACGCTCGTGATGGAACCATTTTCAAAGATTCTGAGTATCTGGAATTTCTTGACCATCTTGCCAAGCCTGTTGAGAATCTTCCCAGTGCTGAGATACAATTGGACAAGAGGGAAGCAGAACGATCTGGTGCTGCAAAAGATATTCCTATAGTTACCCCACTGATGGACTTTGTGCGCCAGAAAAGAGCTGCCAAGGGACCTCGGAGATCAATTTCTAATGGAAAAGTGAGTAGAAAAGCTGGCACATTGTCAAATGGGAGTTCTAGCTCTGCTACATCAAGACGAGGTTCTGGAAAGAAGAGGGTTCCCACTACAATGTATGTTGCAAGGAACCAGGACAAAAGTTCAACTATAAAAGACAAATCAACTTACACTTCGGTTCGCAGGCAAGGTGATCAACATCTTTCAAATAAAACCTCAACCGTGGCTTCTTCAGATGGAACTCAAACACTTGATGAAAATGCTGGAGCATCTGGAAGTAATGATGCAGGGAAGAAGAAAATCCTGCTTCTTAAAGGGAAGGGACTGGAGACAATTACAATATCTGACTTTGACAGCATGTCACAGCATAAAAACATAACATCTTCAGCTAAAACGGCTCCTGATTCAACAGCTCTGAAGCGGAATCAACGGCCTGAAGGTACTGGAAGGATTGTCAGAAGAATACTCTCAAACAAAGATTTGCTTCAAAGTCAGTCTCCCAGGCCCCAATCTGAGCCGCAAATCCAAGCATCCAATCTAGAAAAGGAAAAACAACCATCTCACTCCTTACATGTTCCGACGATTTTGAAGAGCAGTAACGGGACACCAGAAAATAGGATTGGTATGCATGATTTACATGTTTCAAGTGAGAGGCAGGAGAGACGTGTTAGACATAGGGATAGACCTGATCGTGGTATATGGACAAATCGCTCCAATGGAGGTGATGATGGTTTGTCATTGTCTGCATCCTCACAAGCAAATACTTTGGAAGGAGGTAAAGCAGAGCTGAAACACGACATGCCAAATGCAGGAGGTGGGGAGCTAAAATCTATTGGAAGTGGCCGAGCCAGTTATTCATCAGAAAATGGTTTCAGTAAGCATTTTGGTCGCCGTGGTCCATCACATGGGGTGAAGGATGTTGATGATGGCTATTCACTTTCAAGTGAGGGGAAGCCTCCTAGAAGAATTAGTGGCTCTGCTTATGGTTCCCACGAGAAACAAGTTTGGGTTCAAAAAGCAAGTTCTGGGACCTAG 1557 0.4399 MKGGAMDRTKVVLRHLPPSLSESALSQQIDAVFSGRYNWLSFRSAKFRSQKHVSYSRAYIQFKSQDDVLDFADFFNAHVFVNEKGAHFKVIVEYAPSQRVPIHRSKKDARDGTIFKDSEYLEFLDHLAKPVENLPSAEIQLDKREAERSGAAKDIPIVTPLMDFVRQKRAAKGPRRSISNGKVSRKAGTLSNGSSSSATSRRGSGKKRVPTTMYVARNQDKSSTIKDKSTYTSVRRQGDQHLSNKTSTVASSDGTQTLDENAGASGSNDAGKKKILLLKGKGLETITISDFDSMSQHKNITSSAKTAPDSTALKRNQRPEGTGRIVRRILSNKDLLQSQSPRPQSEPQIQASNLEKEKQPSHSLHVPTILKSSNGTPENRIGMHDLHVSSERQERRVRHRDRPDRGIWTNRSNGGDDGLSLSASSQANTLEGGKAELKHDMPNAGGGELKSIGSGRASYSSENGFSKHFGRRGPSHGVKDVDDGYSLSSEGKPPRRISGSAYGSHEKQVWVQKASSGT 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1863 518 MobiDBLite consensus disorder prediction 332 357 - -
Lal5g1863 518 MobiDBLite consensus disorder prediction 299 518 - -
Lal5g1863 518 MobiDBLite consensus disorder prediction 182 206 - -
Lal5g1863 518 MobiDBLite consensus disorder prediction 413 431 - -
Lal5g1863 518 Gene3D - 4 99 IPR012677 -
Lal5g1863 518 MobiDBLite consensus disorder prediction 215 264 - -
Lal5g1863 518 MobiDBLite consensus disorder prediction 384 407 - -
Lal5g1863 518 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 6 511 IPR039722 GO:0000184
Lal5g1863 518 CDD RRM_like_Smg4_UPF3 10 96 - -
Lal5g1863 518 Pfam Smg-4/UPF3 family 8 170 IPR005120 -
Lal5g1863 518 MobiDBLite consensus disorder prediction 365 379 - -
Lal5g1863 518 MobiDBLite consensus disorder prediction 168 269 - -
Lal5g1863 518 SUPERFAMILY RNA-binding domain, RBD 9 99 IPR035979 GO:0003676
Lal5g1863 518 MobiDBLite consensus disorder prediction 299 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1863 Lal-Chr5 20227870 20235569 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1863 K14328 - gmx:100799816 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1863 5 20227870 20235569 Lal5g1863 5 20227870 20235569 ECH
Lal5g1863 5 20227870 20235569 Lal3g0005 3 49943 59900 LSH