Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1854 ATGGACAAGTACGAGCTGGTGAAGGATATAGGATCTGGCAATTTTGGGGTTGCTAGGCTTATGCGTAACAAACACACCAAAGAGCTCGTTGCCATGAAATTCATTGAACGTGGTCACAAGATAGATGAGAATGTTGCAAGGGAAATCATAAACCACAGAAGTCTTCGCCATCCCAACATTATTCGCTTCAAGGAGGTGGTGTTGACTCCCACACACCTTGGAATAGTTATGGAGTATGCAGCAGGTGGAGAGCTCTTTGACCGAATTTGCAATGCTGGAAGGTTCAGTGAAGATGAGGCTCGATATTTCTTCCAGCAGCTCATTTCAGGAGTTTGCTACTGTCATTCCATGCAAATCTGCCATCGAGACTTGAAGCTGGAGAACACCTTATTGGATGGCAGCCCTGCCCCACGTCTCAAAATTTGTGATTTTGGTTATTCTAAGTCATCTCTGCTTCATTCAAGGCCTAAATCAACAGTGGGAACTCCAGCCTACATTGCACCAGAGGTTTTTTCACGTAGAGAATATGATGGAAAGATGGCAGATGTTTGGTCCTGTGGAGTGACTCTTTATGTAATGCTGGTTGGAGCATACCCATTTGAGCACCAAGAGGATCCCAAAAACTTCAGGAAAACCATAAATCTAATTATGGCTGTTCAATACAAGATCCCAGACTATGTTCACATATCTCAAGACTGCAGGCATCTTCTATCTCGTATTTTTGTGGCAAATCCAGTTAGGAGAGTAACCATTAAGGAAATAAAGTCCCACCCATGGTTTTTAAAGAATTTGCCTAGAGAATTGACAGAAATGGCTCAAGCTGTCTACTACAGAAAAGAAAATCCAACCTTTTCCCTCCAGAGCATAGAAGATATCATGAATATTGTTGAGGAGGCCAAAACTCCACCTCCAGTTTCGCAGTCAATTGGAGGGTTTGGCTGGGGTGGTGAAGAAGAAGAAGAAGATGATGAAACAAAAGAAGCAGCAGAAGCTGGGGAGGAAGATGAGTATGAAAAGAGGGTCAAAGAGGCGCAGGCTAGTGGAGAGTTTCATATCAGTTAA 1062 0.4331 MDKYELVKDIGSGNFGVARLMRNKHTKELVAMKFIERGHKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLGIVMEYAAGGELFDRICNAGRFSEDEARYFFQQLISGVCYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVFSRREYDGKMADVWSCGVTLYVMLVGAYPFEHQEDPKNFRKTINLIMAVQYKIPDYVHISQDCRHLLSRIFVANPVRRVTIKEIKSHPWFLKNLPRELTEMAQAVYYRKENPTFSLQSIEDIMNIVEEAKTPPPVSQSIGGFGWGGEEEEEDDETKEAAEAGEEDEYEKRVKEAQASGEFHIS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1854 353 PANTHER SERINE/THREONINE KINASE 2 347 - -
Lal5g1854 353 MobiDBLite consensus disorder prediction 303 353 - -
Lal5g1854 353 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2A-RELATED 2 347 - -
Lal5g1854 353 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1854 353 MobiDBLite consensus disorder prediction 315 331 - -
Lal5g1854 353 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Lal5g1854 353 SUPERFAMILY Protein kinase-like (PK-like) 2 305 IPR011009 -
Lal5g1854 353 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1854 353 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lal5g1854 353 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Lal5g1854 353 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1854 353 CDD STKc_SnRK2 3 259 - -
Lal5g1854 353 MobiDBLite consensus disorder prediction 332 346 - -
Lal5g1854 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1854 Lal-Chr5 20170762 20175752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1854 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 43.333 1.64e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Lal5g1854 Pkinase 2.7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1854 K14498 - gmx:100812259 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1854 5 20170762 20175752 Lal3g0014 3 91241 95220 LSH
Lal5g1854 5 20170762 20175752 Lal11g0025 11 175287 177927 LSH