Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1853 ATGGAGAGAAATTCCAGTTCATATAATCCTCACCTAACCTCTACTTTGAAGAAGAATTCTACAAAACAGCAGCTTGATCATTCAAAGCATCATCATCTTAGAGAAGATTATATCTCTTCATCTTTCAATCTGAAGAATGTTTCAAAACTCATTCTTCCACCACTTGGTGTTTCAAACCAGAATCAGTTAAACTCAAAAGGGTGGGTCATATCTCCAATGGATTCAAGATACAGGTGTTGGGAGAGTTTAATGGTTGTTCTGGTAGCTTATTCAGCATGGGTGTATCCATTTGAAGTTGCTTTCATGCAGTCTTCTCCCAATACAAAAGTTGAAATTATGGACATTGTTGTTGATCTTTTCTTTGCTGTTGATATTGTCCTCACATTCTTTGTGGCATACATTGATCGAACAACTCATCTACTAGTTAGAGACTCCAAGAAGATAGTAGTCAGGTACATTTCAACATGGTTGGTAATGGATGTGGCATCAACTATACCATATGAGGAATTGAGTTATTTATTAACTGGCAAACACAAAGTGGGTCTCCCTTGTCTCCTCTTGGGCTTACTCAGATTTTGGCGAATCAGACGTGTGAAGCAATACTTCACTAGGCTTGAAAAAGACATCAGGTTCAGCTATTTCTGGGTCCGATGTGCTAGGCTTCTTTCTGTAACACTGTTCTCAGTTCATTGTGCTGGGTGCCTCTATTACATGCTAGCTGATATGTACCCTCACCAAGGGAAGACATGGATTGGAGCAGTGATACCAAACTTCAGAGAGACAAGCCTTTGGGTCAGATACATTTCAGCAATGTATTGGTCCATCACCACCATGACCACTGTTGGTTATGGAGACCTCCATGCTGTGAACACCATGGAAATGATTTTCATTATTTTCTACATGCTCTTCAACCTTGGTCTCACTGCTTACTTGATTGGAAATATGACCAATCTTGTTGTTGAAGGAACTCGCCGCACCATGGAATTTAGAAATAGCATTGAAGCAGCATCAAACTTTTTGTACCGAAATAGGTTGCCACCAAGGTTAAAAGAGCAGATCCTGGCCTACATGTGTTTAAGATTCAAAGCTGAGAGCTTGAATCAGCATCACCTTATTGAACAGTTACCAAAGTCTATTTGCCAAAGCATCTGCCAGCATTTGTTCTTTGCAACTGTAGAGAAAGTATATCTTTTCAAAGGAGTCTCAAAAGAAATTCTTTTGTCCTTGGTTGCAAAAATGAAGGCAGAATATATACCACCTAGAGAGGATGTTATAATGCAAAGTGAATCACCTGATGATGTTTACATTATAGTGTCCGGAGAAGTGGAAATAATCGATTGTGTAATGGAGAAAGAGAAAATTTTAGGGACTCTACACACAGGTGACATGTTTGGAGAAGTTAGTGCACTTTGTTGTAGACCTCAGAATTTTACCTTTAGAACCAAGACTCTCACTCAGCTCCTCAGGTTGAAAACCAATACCCTCATAGAAGTAATGCAGATTAAAAAGGAAGACAATATACAAATTCTCAAAAATCTACTTCAGCATTTCAAGCAGCTTAAGGAACTGAGTATTAGAGATTTAATGGTGGAGAATATGGAAGAAGAAGATCCAAACATGGCTGTGAACTTGTTAAGTGTGGCCAGCATAGGCAATGCTGCTTTTCTTGAAGAGCTTCTAAGAGCAGGTTTGGATCCTGACATTGGAGACTCCAAAGGGAAAACCCCATTGCACATAGCAGCATCAAATGGGCATGAAGAGTGTGTTAAAGTCCTACTCAAACATGCATGCAACATACACATAAGAGACATGGATGGCAACACTGCATTATGGGATGCTATATCATCAAAACATCACTCCATATTCCGGATCCTATACCAGCTGGCTGCTCTCTCTGATCCACACATAGCAGGAGATCTCCTATGTACAGCAGCAAAAAGAAGTGATGTAACATTGATGAATGAGTTACTAAAGCAAGGATTAAATGTTGACTCCAAAGACCACTATGGTATAACACCAATCCAAGTTGCCATGGAACAAAATCATGAAGACATGGTTAAGTTGCTTGTGATGAGTGGTGCAGATGTCACTGATATACATACTCATGAATTTTCTGCATCCACCTTAAGTGAAATTCTGAAGAAGCATGAAATTGGACATCTAATAAATATACATGAGGCCATACCTAGTGAGGTTGTATTAAGGGGGCCACGTCAAGAAGATAAAGAACACATTTGGGGAAGATATAATGGACTAAACTGTCCAAGAGTTAGTATATATAAAGGCCACCCTCTACTGAGAAAAGATAAAGGTGCCATGGAAGCTGGGAAGCTAATAAGGTTGCCTGATTCATTTGAGGAGCTTAAAACTATTGCAGGTGAAAAATTTGGGTTTGATGCAAAAGATGTAATGGTGACAGATGAAGAAGGAGCAGAAATAGACTCCATCGGCGTGATCAGAGATAATGATAAGCTTTTTTTTGGTTGA 2487 0.3936 MERNSSSYNPHLTSTLKKNSTKQQLDHSKHHHLREDYISSSFNLKNVSKLILPPLGVSNQNQLNSKGWVISPMDSRYRCWESLMVVLVAYSAWVYPFEVAFMQSSPNTKVEIMDIVVDLFFAVDIVLTFFVAYIDRTTHLLVRDSKKIVVRYISTWLVMDVASTIPYEELSYLLTGKHKVGLPCLLLGLLRFWRIRRVKQYFTRLEKDIRFSYFWVRCARLLSVTLFSVHCAGCLYYMLADMYPHQGKTWIGAVIPNFRETSLWVRYISAMYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFLYRNRLPPRLKEQILAYMCLRFKAESLNQHHLIEQLPKSICQSICQHLFFATVEKVYLFKGVSKEILLSLVAKMKAEYIPPREDVIMQSESPDDVYIIVSGEVEIIDCVMEKEKILGTLHTGDMFGEVSALCCRPQNFTFRTKTLTQLLRLKTNTLIEVMQIKKEDNIQILKNLLQHFKQLKELSIRDLMVENMEEEDPNMAVNLLSVASIGNAAFLEELLRAGLDPDIGDSKGKTPLHIAASNGHEECVKVLLKHACNIHIRDMDGNTALWDAISSKHHSIFRILYQLAALSDPHIAGDLLCTAAKRSDVTLMNELLKQGLNVDSKDHYGITPIQVAMEQNHEDMVKLLVMSGADVTDIHTHEFSASTLSEILKKHEIGHLINIHEAIPSEVVLRGPRQEDKEHIWGRYNGLNCPRVSIYKGHPLLRKDKGAMEAGKLIRLPDSFEELKTIAGEKFGFDAKDVMVTDEEGAEIDSIGVIRDNDKLFFG 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1853 828 SUPERFAMILY cAMP-binding domain-like 324 516 IPR018490 -
Lal5g1853 828 Pfam Ankyrin repeats (3 copies) 548 627 IPR002110 GO:0005515
Lal5g1853 828 Gene3D Jelly Rolls 364 540 IPR014710 -
Lal5g1853 828 CDD CAP_ED 397 510 IPR000595 -
Lal5g1853 828 ProSiteProfiles Ankyrin repeat profile. 669 701 IPR002110 GO:0005515
Lal5g1853 828 ProSiteProfiles Ankyrin repeat region circular profile. 572 603 - -
Lal5g1853 828 Pfam Cyclic nucleotide-binding domain 418 500 IPR000595 -
Lal5g1853 828 SUPERFAMILY Voltage-gated potassium channels 72 320 - -
Lal5g1853 828 MobiDBLite consensus disorder prediction 1 21 - -
Lal5g1853 828 ProSiteProfiles Ankyrin repeat region circular profile. 669 696 - -
Lal5g1853 828 ProSiteProfiles KHA domain profile. 756 828 IPR021789 -
Lal5g1853 828 PANTHER POTASSIUM CHANNEL AKT2/3-LIKE 30 827 - -
Lal5g1853 828 SMART cnmp_10 397 514 IPR000595 -
Lal5g1853 828 PRINTS EAG/ELK/ERG potassium channel family signature 114 124 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal5g1853 828 PRINTS EAG/ELK/ERG potassium channel family signature 125 134 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal5g1853 828 PRINTS EAG/ELK/ERG potassium channel family signature 267 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal5g1853 828 PRINTS EAG/ELK/ERG potassium channel family signature 293 304 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal5g1853 828 PRINTS EAG/ELK/ERG potassium channel family signature 311 320 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal5g1853 828 MobiDBLite consensus disorder prediction 1 25 - -
Lal5g1853 828 PRINTS Ankyrin repeat signature 573 588 IPR002110 GO:0005515
Lal5g1853 828 PRINTS Ankyrin repeat signature 685 699 IPR002110 GO:0005515
Lal5g1853 828 Gene3D - 78 320 - -
Lal5g1853 828 SUPERFAMILY Ankyrin repeat 504 719 IPR036770 -
Lal5g1853 828 SMART ANK_2a 669 698 IPR002110 GO:0005515
Lal5g1853 828 SMART ANK_2a 539 568 IPR002110 GO:0005515
Lal5g1853 828 SMART ANK_2a 572 601 IPR002110 GO:0005515
Lal5g1853 828 SMART ANK_2a 605 636 IPR002110 GO:0005515
Lal5g1853 828 Pfam KHA, dimerisation domain of potassium ion channel 755 827 IPR021789 -
Lal5g1853 828 Gene3D - 541 723 IPR036770 -
Lal5g1853 828 Pfam Ion transport protein 78 326 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal5g1853 828 ProSiteProfiles cAMP/cGMP binding motif profile. 397 516 IPR000595 -
Lal5g1853 828 ProSiteProfiles Ankyrin repeat profile. 572 604 IPR002110 GO:0005515
Lal5g1853 828 PANTHER POTASSIUM CHANNEL AKT1 30 827 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1853 Lal-Chr5 20166527 20175752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1853 35 577 Ion Channels AT4G22200 73.770 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1853 K21867 - gmx:100798422 1356.27