Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1848 ATGTCTCTAACAAACCCACGTCCTCGTGTTATTGTGAATGGAGTTAGAAGAATGAGAACATTCCACTATTTCTGGTGCCTAAACTGCCAACGTACTGTGAGGATACCCTTTACAAATCCAAATGGTTCTTTATGTCCCTATTGCTTCCATTATTTGCGTTATGAGCTTGATATCTCAAGGCCAAGGCTTCTCATGAATAATAATATGCCTACTCACTTACAACCTTCCCCTACTACTACTCAGCTAATGAATGACTTGTCTCTCATTCTTGATCCATCTCTACGGAGACAACACCACCACAACAGCAACCATTTGAACACAACAGCACAATGGGATACAGAAAGTGATGAAGATAGTTCAAATCCACAGGCTTGGATTACTCTTCGGTTTGTTAGACCAACTCGTCCACCAAGGCAATTGCTTCCTCCTCAAGCAAACAACAACAACAACAACAACAACACCCCTTTTGAGAATAATACATTATTAGATGATGGCTTCATTGATCAAGGGATGGTTCTCAATAATAGACCGGGGCCACCTCCAACAGCATCTTCAGCTATTGCAGCATTACCAATAGTTAAAGTAACACGATCCCATTTGGCAAGTGACCCTAATTGCCCTATTTGCAAAGATGAATTTGAGGTTGGTGTGGAAGTTAGAGAGTTGCCATGCAAACATTTCTACCATTCAGACTGCATTCTCCCTTGGCTGCAAATCCACAACACTTGCCCAGTATGCCGCTATGAGTTAAAAGCTGTTCCTAATGCTGATTACCATTCTCACAGTGAGAATGAGTATGGCTTTGGCTTTGGCTTTGAGGATGTTGCAAGCAGCTTCAACTGGATTTGGAACCAGTTGGCTTCTTTCAGGCCTATCCGTGCAGTCCTGGGTTGGACACAAAGACATGGTGGCCAAGGTAAAGGGTGCATAGCACTTAATAGCAATAACATGATCGAGAATAGAGAACTGATGAAGAAGATCTTGAAGACTTGTCATAGCATTTCTGTACTTCCCGAACAGAAACTCGCTCCATTAAAACAAGTGTTTAGATTGAAGGATAAATGGTGTCAAGAATCCATTCAACTCAAAAGATTCAATTCTTTTCAACTGTCAAATGATGCTTTCACGTCCACTTCTTCAACTGCTTTCTCTTTCTTTAGTGGAGGAGGACATGGAGGTTACTTTCAAAAGGCTGGGATGTCCATAAAAAATCCATTTAATGGAAGGAAATGGACAAATGTTGGATCAGTTGCAGTGTTTGTCTTGAGGCACAAAGACATCGTAGGAGGTGGTAGAGAAGATTTGCTGCACATAGCACGTGTGATTGCCCTCAACATGGTCCTAGGGCTATTATCCAATGGCATTGACAATTGGGGACATTTAGGAGGGTTGATTGGTGGAGTTGCTGCGTCGTGGCTTATTGGACCGGCATGGAAATATGAATCCACAACTAGGGATGGAAGAAGAGCTTTCAGTGACAGTGCACCAATGTATAATCTCTTCAGGATTACAAGAGTACCTAAGCAATGGAAATAG 1536 0.4212 MSLTNPRPRVIVNGVRRMRTFHYFWCLNCQRTVRIPFTNPNGSLCPYCFHYLRYELDISRPRLLMNNNMPTHLQPSPTTTQLMNDLSLILDPSLRRQHHHNSNHLNTTAQWDTESDEDSSNPQAWITLRFVRPTRPPRQLLPPQANNNNNNNNTPFENNTLLDDGFIDQGMVLNNRPGPPPTASSAIAALPIVKVTRSHLASDPNCPICKDEFEVGVEVRELPCKHFYHSDCILPWLQIHNTCPVCRYELKAVPNADYHSHSENEYGFGFGFEDVASSFNWIWNQLASFRPIRAVLGWTQRHGGQGKGCIALNSNNMIENRELMKKILKTCHSISVLPEQKLAPLKQVFRLKDKWCQESIQLKRFNSFQLSNDAFTSTSSTAFSFFSGGGHGGYFQKAGMSIKNPFNGRKWTNVGSVAVFVLRHKDIVGGGREDLLHIARVIALNMVLGLLSNGIDNWGHLGGLIGGVAASWLIGPAWKYESTTRDGRRAFSDSAPMYNLFRITRVPKQWK 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1848 511 SUPERFAMILY Rhomboid-like 418 478 IPR035952 -
Lal5g1848 511 SMART ring_2 206 246 IPR001841 -
Lal5g1848 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 253 IPR013083 -
Lal5g1848 511 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 22 298 - -
Lal5g1848 511 CDD RING-H2_RNF126_like 206 247 - -
Lal5g1848 511 Pfam Ring finger domain 205 247 IPR001841 -
Lal5g1848 511 Pfam Rhomboid family 414 477 IPR022764 GO:0004252|GO:0016021
Lal5g1848 511 ProSiteProfiles Zinc finger RING-type profile. 206 247 IPR001841 -
Lal5g1848 511 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 22 298 - -
Lal5g1848 511 SUPERFAMILY RING/U-box 187 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1848 Lal-Chr5 20144719 20149352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1848 7 300 C3H Transcription Factor Family AT1G68180 32.770 2.52e-39 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1848 - K11982 gmx:100793656 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1848 5 20144719 20149352 Lal5g1848 5 20144719 20149352 ECH