Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1843 ATGCCTAAGTCAAAGAGAAATAAACAAGTTACTTTATCGAAGACGAAGAAAAAGGGTAGGGATCATAAAGAGGCGATAGTTAACTCTATAAAAGATGCCTCTGATAAATACAATTCAGTTTACGTGTTTTCATTCGAAAATATGAGGAACCAGAAATTGAAGGAGTTTAGGGAACAATTGAAATCGAGTAGCAGATTCTTTTTGGGTTCTAACAAAGTCATGCAAGTTGCTTTAGGTCGAACTCCTTCCGACGAAATTAAACCTGGCCTTTATAAGCTTTCTAAGCTTTTGCGTGGAGATGCTGGAATGGTTTTTACCAATTTGGATAAAGTTGAAGTTCAAAGGCTGTTTAATGAGTTTGAGGAATATGACTTTGCAAGAACTGGAACCATTGCCACTGAAAAGGTGGATCTCAAAGAGGGTCCTCTAGAGCAGTTCACACATGAGATGGAACCCTTTCTCCGGAAGCAAGGCATGCCTGTTAGGTTGAATAAAGGAGTTGTGGAGCTTGTTTCAGATTATGTTGTTTGTGAGGAAGGGAAGCCTTTGTCACCCGAGGCAGCTCGTATACTGCGTTTGCTGGGAATCAAGATGGCTACATTTCGACTTCATTTGATTTGCAGGTGGAGTCCTGAAGAATTTGAACTTTACATTGATGGCCCTGATGATTCAGATGTTGAGTGA 684 0.402 MPKSKRNKQVTLSKTKKKGRDHKEAIVNSIKDASDKYNSVYVFSFENMRNQKLKEFREQLKSSSRFFLGSNKVMQVALGRTPSDEIKPGLYKLSKLLRGDAGMVFTNLDKVEVQRLFNEFEEYDFARTGTIATEKVDLKEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDYVVCEEGKPLSPEAARILRLLGIKMATFRLHLICRWSPEEFELYIDGPDDSDVE 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1843 227 PANTHER RIBOSOME ASSEMBLY FACTOR MRT4 1 227 - -
Lal5g1843 227 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 227 - -
Lal5g1843 227 Gene3D - 30 212 IPR043141 -
Lal5g1843 227 MobiDBLite consensus disorder prediction 1 16 - -
Lal5g1843 227 Pfam Insertion domain in 60S ribosomal protein L10P 126 196 IPR040637 -
Lal5g1843 227 Gene3D - 125 198 IPR043164 -
Lal5g1843 227 SUPERFAMILY Ribosomal protein L10-like 20 144 IPR043141 -
Lal5g1843 227 CDD Ribosomal_P0_like 21 184 IPR033867 GO:0000027
Lal5g1843 227 Pfam Ribosomal protein L10 19 120 IPR001790 -
Lal5g1843 227 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1843 Lal-Chr5 20122738 20125490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1843 35 219 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 24.352 7.04e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1843 K14815 - gmx:100500064 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1843 5 20122738 20125490 Lal5g1843 5 20122738 20125490 ECH