Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1839 ATGATGTCATTCCGTAGCATAGTTCGTGATGTGAGGGATAGTTTTGGGAGTTTATCTAGGCGAAGTTTTGATGTCAGACTAACTAGCCATCATAGAGGAAAGTCTCATGGGTCGGTACAAGATTTGCATCACCAGTCTCTAGTAATTCAAAGCAGCCGATGGGCAAGCTTACCCCCTGAATTACTGTATGATGTCATTAGACGGCTTGAGGAGAGTGAGAATGCATGGCCATCTCGAAAGCATGTTGTTGCATGTGCTGCAGTTTGCCAGTCTTGGAGGAATATGTGCAAGGAAATTGTTGAAAGCCCTGAGCTCTGTGGAAAACTTACATTCCCTGTGTCCCTGAAGCAGCCTGGGCCACGAGAAGGAATGATTCAATGTTTTATCAAAAGAGATAAATCAAATTTGACATACCATCTGTTCCTTTGTCTCAGCCCCGTTTCGGCTGTTGCAGCTTTGTTAGTTGAAAATGGAAAGTTCCTCCTTTCTGCTAAGAGGACAAGGAGAACAACTTACACAGAGTATGTTATTTCAATGGATGCTGGCAATATTTCTAGATCAAGCAACACTTACATAGGAAAGCTGCGATCAAACTTTCTTGGCACCAAATTCATCATATATGATACACAGCCTCCATACTCTTCTACCCACATATGCCCTCCTGGGACTGGGAGGACAAGCCACAGATTTTACTCCAAAAAGGTCTCACCAAAGGTCCCATCAGGGAATTACAACATAGCTCAGGTAACATATGAATTAAATGTGCTCGGGACACGAGGCCCAAGGAAGATGCATTGCATCATGCATTCAATACCAGCCTCCACACTTGATGCAGGTAGCACTGTTCCTGGCCAGCCAGAGCTTCTTCCGTGTTCCCTTGAGGACTCATTTCGCAGCATCTCATTCTCGAAGTCCCTAGATCATTCCGTCGAGTTCAGCAGTGCACGATTTTCTGAGATTGGAGGATCTTGTAATGAGGACAACGATGACAAGATGAGACCCTTGGTTCTGAAAAACAAGCCTCCAAGATGGCATGAACAATTACAATGCTGGTGCCTTAATTTCCGAGGAAGGGTGACCGTTGCATCAGTTAAAAACTTTCAGTTGATTGCGGCCACCCAACCAGCTGCTGGTGCACCAACACCATCTCAACCGGCAGCACCGCTAGAGCAGGATAAGATTATTCTGCAGTTTGGCAAAGTTGGGAAGGATATGTTCACCATGGATTATAGGTTTCCTCTATCTGCATTCCAGGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG 1305 0.4498 MMSFRSIVRDVRDSFGSLSRRSFDVRLTSHHRGKSHGSVQDLHHQSLVIQSSRWASLPPELLYDVIRRLEESENAWPSRKHVVACAAVCQSWRNMCKEIVESPELCGKLTFPVSLKQPGPREGMIQCFIKRDKSNLTYHLFLCLSPVSAVAALLVENGKFLLSAKRTRRTTYTEYVISMDAGNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSTHICPPGTGRTSHRFYSKKVSPKVPSGNYNIAQVTYELNVLGTRGPRKMHCIMHSIPASTLDAGSTVPGQPELLPCSLEDSFRSISFSKSLDHSVEFSSARFSEIGGSCNEDNDDKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAAPLEQDKIILQFGKVGKDMFTMDYRFPLSAFQAFAICLSSFDTKLACE 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1839 434 Pfam F-box domain 54 100 IPR001810 GO:0005515
Lal5g1839 434 ProSitePatterns Tub family signature 1. 355 368 IPR018066 -
Lal5g1839 434 ProSitePatterns Tub family signature 2. 419 434 IPR018066 -
Lal5g1839 434 PRINTS Tubby superfamily signature 175 191 IPR000007 -
Lal5g1839 434 PRINTS Tubby superfamily signature 191 215 IPR000007 -
Lal5g1839 434 PRINTS Tubby superfamily signature 243 270 IPR000007 -
Lal5g1839 434 PRINTS Tubby superfamily signature 337 354 IPR000007 -
Lal5g1839 434 PRINTS Tubby superfamily signature 355 371 IPR000007 -
Lal5g1839 434 PRINTS Tubby superfamily signature 391 410 IPR000007 -
Lal5g1839 434 PRINTS Tubby superfamily signature 412 434 IPR000007 -
Lal5g1839 434 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 2 434 - -
Lal5g1839 434 Gene3D - 49 105 - -
Lal5g1839 434 PANTHER TUBBY-RELATED 2 434 - -
Lal5g1839 434 Gene3D Tubby Protein; Chain A 113 428 IPR025659 -
Lal5g1839 434 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515
Lal5g1839 434 SUPERFAMILY Tubby C-terminal domain-like 103 434 IPR025659 -
Lal5g1839 434 Pfam Tub family 115 429 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1839 Lal-Chr5 20088893 20092927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1839 2 434 TUB Transcription Factor Family AT1G76900 68.298 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lal5g1839 Tub 6.4e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1839 K19600 - gmx:100814578 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1839 5 20088893 20092927 Lal3g0022 3 138807 145049 LSH