Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1835 ATGGCTGACGCTGAGGACATTCAACCTCTTGTTGTTGACAATGGAACTGGAATGGTCAAGGCTGGTTTTGCTGGTGATGATGCTCCTAGGGCTGTGTTCCCCAGTATTATTGGGCGACCTCGTCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATGCTTATGTTGGTGATGAAGCCCAGTCAAAGAGGGGTATTCTCACCTTGAAGTACCCAATAGAGCATGGTATAGTCAGCAACTGGGACGATATGGAAAAGATTTGGCATCACACTTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAACACCCTGTACTTCTTACTGAGGCGCCACTTAATCCCAAGGCCAACAGAGAGAAGATGACCCAAATTATGTTTGAGACTTTCAACGTACCTGCTATGTATGTTGCAATTCAGGCTGTCTTGTCTCTATATGCGAGTGGACGTACTACAGGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATTTATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCGTGATTTAACGGAGTACTTGGTGAAAATTCTTACTGAGAGAGGATACTCCTTCAATACCTCTGCTGAAAAGGAAATTGTCCGTGATGTGAAGGAGAAATTAGCATATGTGGCCCTTGATTTTGAGCAAGAAATGGACACTACTAAGAGTAGTTCTGCAGTGGAGAAGAGCTATGAATTGCCTGATGGGCAAGTCATTACAATAGGTGCTGAGAGATTCCGTTGTCCAGAAGTACTCTTCCAGCCTTCTCTAATTGGTATGGAAGCCCCTGGAATTCATGAAACTACATACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGATCTTTATGGAAATATCGTTCTTAGTGGTGGGTCCACTATGTTCCCGGGTATTGCTGATCGTATGAGCAAGGAAATTAGTGCTCTTGCTCCAAGCAGCATGAAAATCAAAGTGGTTGCACCCCCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCACTTAGCACCTTCCAACAGGTTTCATGTGGATCTCCAAGGGTGAATATGATGAGTCTGGTCCAGCCATTGTTCACAGGAAGTGCTTCTAAGTTGTGGGTGTATTTGAAATTGATGTTGATCAAGTTCTTGAAGCAGTGTTTTGCCATATATCAGTCAAGTTTGGTCGACTTATTTGATGCTATGGGCTTTTAA 1242 0.4452 MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYLVKILTERGYSFNTSAEKEIVRDVKEKLAYVALDFEQEMDTTKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVSCGSPRVNMMSLVQPLFTGSASKLWVYLKLMLIKFLKQCFAIYQSSLVDLFDAMGF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1835 413 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lal5g1835 413 Pfam Actin 5 357 IPR004000 -
Lal5g1835 413 PANTHER ACTIN 1 358 IPR004000 -
Lal5g1835 413 SUPERFAMILY Actin-like ATPase domain 149 358 IPR043129 -
Lal5g1835 413 PANTHER ACTIN 1 358 - -
Lal5g1835 413 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lal5g1835 413 Gene3D Actin; Chain A, domain 4 182 273 - -
Lal5g1835 413 Gene3D - 140 340 - -
Lal5g1835 413 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lal5g1835 413 PRINTS Actin signature 28 37 IPR004000 -
Lal5g1835 413 PRINTS Actin signature 51 62 IPR004000 -
Lal5g1835 413 PRINTS Actin signature 63 85 IPR004000 -
Lal5g1835 413 PRINTS Actin signature 117 130 IPR004000 -
Lal5g1835 413 PRINTS Actin signature 142 161 IPR004000 -
Lal5g1835 413 PRINTS Actin signature 238 254 IPR004000 -
Lal5g1835 413 Gene3D - 10 358 - -
Lal5g1835 413 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lal5g1835 413 SMART actin_3 7 369 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1835 Lal-Chr5 20074421 20077657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1835 1 357 Cytoskeleton Gene Families AT5G09810 94.678 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1835 K10355 - gmx:100778206 702.975