Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1832 ATGTTGATGCCTGAGTTCAACATTCTGTCTAATGTTAGTTTTCCTGCAAATATGCAGTTTCAAATGTCTGAAGCGGATGAGTTTCGTTGCTTCATTGGTGGCCTGTCATGGTCAACTTCTGATAGAAAATTAAAGGATACATTTGAAAAGTATGGCAGACTTGTTGAGGCAAAGGTGGTAGTTGACAAATTCTCTGGCCGTTCTCGCGGTTTCGGGTTTGTCACATTTGATGACAAGAAAGCTATGGAGGAGGCTATAGATGCTATGAATGGAATGGATTTAGATGGTCGAACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCAAGAGATGATGGTGATCGCCACCGAGAACGTGGCCGTGATCGGGGTCGTGATCATGATTATGGAGGTGGCCGGGGATCTAATGGTGGTGAATGCTTTAAGTGTGGTAAACCTGGTCATTTTGCTAGAGAGTGTCCAAGTGAAGGTGAAAGAGGGGGGAGATATGGTGACAGGGAAAGTAGATATGGTGACAGGGAAAGTAGATATGGTGGCAGGAGTGGTGGTCCTGATAGGAATGCAGATCGTTCTTCTGGTCGGCGTCACAGGGATGCTGATAGTCATGGAGATTCTGGAAATGATCGATATGACCGTGACCGGGCTGGACCTTATGAGCGTCGAGGATCTGGAGGCCATCGTTGA 687 0.4629 MLMPEFNILSNVSFPANMQFQMSEADEFRCFIGGLSWSTSDRKLKDTFEKYGRLVEAKVVVDKFSGRSRGFGFVTFDDKKAMEEAIDAMNGMDLDGRTITVDRAQPQQGSRDDGDRHRERGRDRGRDHDYGGGRGSNGGECFKCGKPGHFARECPSEGERGGRYGDRESRYGDRESRYGGRSGGPDRNADRSSGRRHRDADSHGDSGNDRYDRDRAGPYERRGSGGHR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1832 228 PANTHER TRANSFORMER-2-RELATED 22 183 - -
Lal5g1832 228 MobiDBLite consensus disorder prediction 188 228 - -
Lal5g1832 228 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 22 183 - -
Lal5g1832 228 SUPERFAMILY RNA-binding domain, RBD 16 138 IPR035979 GO:0003676
Lal5g1832 228 SMART rrm1_1 29 102 IPR000504 GO:0003723
Lal5g1832 228 Gene3D - 137 199 - -
Lal5g1832 228 MobiDBLite consensus disorder prediction 146 181 - -
Lal5g1832 228 SMART c2hcfinal6 140 156 IPR001878 GO:0003676|GO:0008270
Lal5g1832 228 MobiDBLite consensus disorder prediction 96 228 - -
Lal5g1832 228 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Lal5g1832 228 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 100 IPR000504 GO:0003723
Lal5g1832 228 SUPERFAMILY Retrovirus zinc finger-like domains 132 159 IPR036875 GO:0003676|GO:0008270
Lal5g1832 228 MobiDBLite consensus disorder prediction 108 133 - -
Lal5g1832 228 Gene3D - 16 136 IPR012677 -
Lal5g1832 228 ProSiteProfiles Zinc finger CCHC-type profile. 141 156 IPR001878 GO:0003676|GO:0008270
Lal5g1832 228 Pfam Zinc knuckle 140 156 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1832 Lal-Chr5 20062681 20064806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1832 30 105 Eukaryotic Initiation Factors Gene Family AT4G34110 36.842 1.10e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1832 - - lang:109329957 414.461