Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1827 ATGGGAGATAATAATGCCAACCTTCCACCCGGGTTTAGATTTTATCCAACAGATGAAGAACTTGTTGTCCATTTTCTTCATAGAAAGGCATCACTTCTACCTTGCCAACCTCATGTTATCCCTGATCTTCACCTCTCTCAATATGATCCATGGGAACTTGATGGTACAGCTTTGGGAGAGGGAAACCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTAACTGAGAATGGGTATTGGAAGGAAACAGGAATAGAAGAAGCAGTGGTTACAAGTTCAAGTAACAAGAGGGTTGGCATCAAGAAATATTTTGTTTTCCATGTTGGAGAATCCACTGCTGATGGAATCAAAACCAATTGGATAATGCAAGAGTATAGTCTATTAGATTCTGCTTCCTCTAGCACCAGATCATCCAAAACAAAATCACATCAAAAAACAGATTACAGTAAATGGGTGATTTGTAGAGTTTATGAGCTCAATGAAGATGAAGATGAAGATGATGATGGAACAGAACTTTCTTGTTTGGATGAAGTATTCTTGTCATTAGATGATCTTGATGAAATTAGCTTACCAAATTAG 582 0.3797 MGDNNANLPPGFRFYPTDEELVVHFLHRKASLLPCQPHVIPDLHLSQYDPWELDGTALGEGNQWYYYSRRTQNRVTENGYWKETGIEEAVVTSSSNKRVGIKKYFVFHVGESTADGIKTNWIMQEYSLLDSASSSTRSSKTKSHQKTDYSKWVICRVYELNEDEDEDDDGTELSCLDEVFLSLDDLDEISLPN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1827 193 Pfam No apical meristem (NAM) protein 9 128 IPR003441 GO:0003677|GO:0006355
Lal5g1827 193 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Lal5g1827 193 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
Lal5g1827 193 PANTHER NAC TRANSCRIPTION FACTOR 56 5 190 - -
Lal5g1827 193 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Lal5g1827 193 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 5 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1827 Lal-Chr5 20041457 20045855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1827 4 164 NAC Transcription Factor Family AT1G69490 41.808 4.82e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal5g1827 NAM 1.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1827 - - gmx:100170712 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0920 14 11607787 11609945 Lal5g1827 5 20041457 20045855 PCT
Lal5g1827 5 20041457 20045855 Lal14g0920 14 11607787 11609945 PCT