Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1816 ATGGCCACCAACTCACAACCACCGCCGCAACAAGCACTGAACTTAGAGTCTCTTTCCGGCATTGATTCAACAACTCTGTCACAATCTGAAATCCAAGCCCTCTCTCTCTGCTCTCTCTCCACCTTCGATCTTCGCTCAACACGTCATCTCGTCACTCCCATAATCGACCCTTCTTTCTTTAACGAGAGCTCCGGCTCAAGCAGACAAACCTACTCCCGCCGTCGCCGTCTCCCCGGTCTCATCACTGCCACCAAAGATGTCGTCACCGATCACAACACCGATAACCGTAGAATCATCGATTATTTAAAGCAATTGATAAGAGAAGATCCAAAGTTCGATCAAATCGAGCTTCTTCAACCTAGTGTGAACACGGAAATTGTTGCTCATAATAGCGATCCGAGAGAGAGAAGCGAGTTAAGGTTAGTGAGGAAGAGGAAAAGAGGGAGGAAGCCGAAGGTGAAGGTGAATTTGGATGAGCGTTACAAAGGAATGGAGATTGTGAACAATAATGGTGTTGCTATTGATTTATTGGCATTGGCTGTTGCGGATGATCCGTATGGTGAGGAATTGAGGAGAAGGAGTGAGGGATTGAAGAGTGAAGAAGAGTTGTTAGGGTTTTTGAGGGATTTGGAGGGGCAATGGGGAAGCAGGAGAAGGAAGAGGAAGATTGTGGATGCTGCCAGTTTCGGCGATGTCTTGCCACGTGGTTGGAAGCTTTTGCTTGGGTTGAAGAGGAAGGGTGGCCATGCTTGGATCTATTGCCGCAGATACATGAGCCCCACTGGACAGCAATTTCTGTCTTGCAAAGAAGTTTCTTCATATTTGCAGTCTCTTTCCGGTCATAATGATGCACAGTTACAAATCAGTTGTAGGAGTGAGCATATGCAGCAGGAACATACATTGACTATGAAGGAACATACAATGACCACAGAAAATTCTGAAGGTGTTACCCACGAGGATCGAGACCAATGGCAGATTGTTGTAGCTAACTCAGATGTGCCCAATTTACCTGTTTCTAATGAACGCTTGAAGGAAGTGGCCTTGCTGGGGATTGACAATCTTGCAGATGTGCAAATACATGACCTATTTGAATGTCACAGATGCAACTTGAGCTTTGATGAGAAGGATACATACTTGCAGCACCTATTGTCAGTTCACCAGAGGACAACAAGGCGTTATCGACTTGGTTCTTCTGTTGGAGATGGAGTTATAATTAAAGATGGAAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCAGGAAAGGCATCGTTACAATGGCCACGTGGGGATCCATGTTAGGAATTATGTGAGGAAAGATGAAGATTCACCAAGCCAGGCAAATGTTCAAAGGAGTGATAATTCTCCAGTCCGGGAGGACATACCTTCAAGGATCTCTAAGATGGATGCCCTTATTGAAATTGCTCAAAGCTCTATCATGGAGAACTCTGTCAAGGAACCCCATACTTCAGTTGAACTTAATTTAATTCCCGCTTCAGAAATCGCTGCTGGTGACTTAGATCAAGACATAAACATGGAGTCTCCTATTGGTGAACAGAAAATGGAGTATTGCATGACTGGCAAAAATGTGGTTCAAGATTTAAATCAGCAAGATTGTCCACATTTGCTTGGGGATGGGAAAGTAGAGGAGACTGATGGTGATAACCAAGTTATAGGTGCAAAGATGATTACTTGTCTAGATAACATGGAGTTGTTTTCTGTAAATGAGCAAAATGTTAATGCACATGATGATGTGGCGTTGACTGCTGAGGGGTATGATCAGTTTGGGATTGATTTGGAAGGAGTTTCTCAAAGCCCTTCACTTCATTTATGTGGCAATTACATGATACCTGAATCTGAGAAGAATGAAAACTCTGGTTGCACTAATGCCAAGCAGCAGTTTAAGCTTGATGGAGACAGAAGTAATAGGAGTGCTGGGTTAGATGGCTGCATGGATGTACCTGTTAGCGTTAATGTTCAATCGATGGTAATGCCAGCTTCTTTAGAAAATGTGGTGCATTCGAGGGATTCTAAGCAATCTATATCTACAAAGCAATCTTTGGATTGTTTTCCTTGGATCACCTCAGATAAGGGTGGAACACAATTTTGCAGTGTTGACCATGAACATGATAATGTGAAGGGGTACCAGGAACTTAGGTTGGATGAAATAGGTCTTCAATACGATTTTGCAAGTGGTCAAAATTCTCTTTCTCTGTCTGATGTGACAACTGAGTTGGCAAGCAACACAGTGATGGAAGGGATACATACATTCCCAGTTCATGCTGAACAAGAAGTTATGTTAAATATGGGTGAAAGAACTCAGGTCACGGCTGTGTGCATATGGTGTGGAATAGACTTTAACCACGATGCTGTTGATTCTGAAATACAGCCAGATTCTGTTGGATTCATGTGTCCAGCTTGTAAGACAAAGATCTCTGGTCAAATCAATGTGTTGGACAGTGGATCACTGAATGCTGATCATCTTTAG 2487 0.4335 MATNSQPPPQQALNLESLSGIDSTTLSQSEIQALSLCSLSTFDLRSTRHLVTPIIDPSFFNESSGSSRQTYSRRRRLPGLITATKDVVTDHNTDNRRIIDYLKQLIREDPKFDQIELLQPSVNTEIVAHNSDPRERSELRLVRKRKRGRKPKVKVNLDERYKGMEIVNNNGVAIDLLALAVADDPYGEELRRRSEGLKSEEELLGFLRDLEGQWGSRRRKRKIVDAASFGDVLPRGWKLLLGLKRKGGHAWIYCRRYMSPTGQQFLSCKEVSSYLQSLSGHNDAQLQISCRSEHMQQEHTLTMKEHTMTTENSEGVTHEDRDQWQIVVANSDVPNLPVSNERLKEVALLGIDNLADVQIHDLFECHRCNLSFDEKDTYLQHLLSVHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFQERHRYNGHVGIHVRNYVRKDEDSPSQANVQRSDNSPVREDIPSRISKMDALIEIAQSSIMENSVKEPHTSVELNLIPASEIAAGDLDQDINMESPIGEQKMEYCMTGKNVVQDLNQQDCPHLLGDGKVEETDGDNQVIGAKMITCLDNMELFSVNEQNVNAHDDVALTAEGYDQFGIDLEGVSQSPSLHLCGNYMIPESEKNENSGCTNAKQQFKLDGDRSNRSAGLDGCMDVPVSVNVQSMVMPASLENVVHSRDSKQSISTKQSLDCFPWITSDKGGTQFCSVDHEHDNVKGYQELRLDEIGLQYDFASGQNSLSLSDVTTELASNTVMEGIHTFPVHAEQEVMLNMGERTQVTAVCIWCGIDFNHDAVDSEIQPDSVGFMCPACKTKISGQINVLDSGSLNADHL 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1816 828 SUPERFAMILY DNA-binding domain 231 281 IPR016177 GO:0003677
Lal5g1816 828 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 11 817 IPR037472 -
Lal5g1816 828 Gene3D - 211 323 - -
Lal5g1816 828 Gene3D Classic Zinc Finger 359 455 - -
Lal5g1816 828 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 223 295 IPR001739 GO:0003677
Lal5g1816 828 SMART c2h2final6 363 386 IPR013087 -
Lal5g1816 828 SMART c2h2final6 410 432 IPR013087 -
Lal5g1816 828 ProSiteProfiles Zinc finger C2H2 type domain profile. 410 437 IPR013087 -
Lal5g1816 828 ProSitePatterns Zinc finger C2H2 type domain signature. 412 432 IPR013087 -
Lal5g1816 828 MobiDBLite consensus disorder prediction 439 460 - -
Lal5g1816 828 ProSitePatterns Zinc finger C2H2 type domain signature. 365 386 IPR013087 -
Lal5g1816 828 ProSiteProfiles Zinc finger C2H2 type domain profile. 363 391 IPR013087 -
Lal5g1816 828 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 11 817 - -
Lal5g1816 828 Pfam Methyl-CpG binding domain 232 279 IPR001739 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1816 Lal-Chr5 19974296 19990739 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal5g1816 MBD 1.5e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1816 - - lang:109329666 1464.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1816 5 19974296 19990739 Lal3g0037 3 218996 224350 LSH